Jatropha Genome Database

JcCA0304341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304341.10 - phase: 2 /partial
         (269 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003344 protein phosphatase pp2a regulatory subunit B, put...   504   e-143
27395.m000083 protein phosphatase pp2a regulatory subunit B, put...   389   e-109
30147.m013921 protein phosphatase pp2a regulatory subunit B, put...   367   e-102

>29794.m003344 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 513

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 235/269 (87%), Positives = 254/269 (94%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETF+SADDLRINLWNLEISNQSFNIV++KP NMEDLTEVITSAEFHP+HCNMLAYSSS
Sbjct: 245 DGETFVSADDLRINLWNLEISNQSFNIVNLKPNNMEDLTEVITSAEFHPSHCNMLAYSSS 304

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           + SIRLID+RQSALCD+H+K FEEQE PGSRSFFTEIIASISDIKFAKDGRHILSRDYM 
Sbjct: 305 KSSIRLIDMRQSALCDTHSKSFEEQEVPGSRSFFTEIIASISDIKFAKDGRHILSRDYMN 364

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDINMDSGPVA+FQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR
Sbjct: 365 LKLWDINMDSGPVASFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 424

Query: 181 VFGCAPGSTEETTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDF 240
           VFGC+ GSTE TTLEA+KNPMRRQVQTPSRPSRS+ +++   RRGA+S GVD NGN+ DF
Sbjct: 425 VFGCSEGSTEATTLEATKNPMRRQVQTPSRPSRSMGNLSLGFRRGADSAGVDTNGNALDF 484

Query: 241 TTKLLHLAWHPTENSIACAAANSLYMYYA 269
           TTKLLHLAWHPTENS+ CAA+NSLYMYYA
Sbjct: 485 TTKLLHLAWHPTENSLVCAASNSLYMYYA 513


>27395.m000083 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 194

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/188 (98%), Positives = 185/188 (98%)

Query: 82  FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEY 141
           FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEY
Sbjct: 7   FEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEY 66

Query: 142 LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEETTLEASKNPM 201
           LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCA GS E TTLEASKNPM
Sbjct: 67  LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCASGSNEATTLEASKNPM 126

Query: 202 RRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDFTTKLLHLAWHPTENSIACAAA 261
           RRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDFTTKLLHLAWHPTENSIACAAA
Sbjct: 127 RRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDFTTKLLHLAWHPTENSIACAAA 186

Query: 262 NSLYMYYA 269
           NSLYMYYA
Sbjct: 187 NSLYMYYA 194


>30147.m013921 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 506

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/274 (66%), Positives = 213/274 (77%), Gaps = 7/274 (2%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETFISADDLRINLWNLEIS+Q FNI+D+KP+NMEDLTEVITSAEFHP +CNMLAYSSS
Sbjct: 235 DGETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSS 294

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           RG I L+D+RQSALCD  A++ ++ E  GS+SFFTEIIASISD+KF  DG HILSRDYM 
Sbjct: 295 RGFIHLVDMRQSALCDQSARILQDAECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMN 354

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDI MD  P++ F++HE+LRPKL DLY NDSIFDKFECC+SGDGL  ATGSYSNL R
Sbjct: 355 LKLWDIRMDPLPISIFKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLR 414

Query: 181 VFGCAPGSTEETTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGAESPGVD---ANGNS 237
           +F    GS    T+EASKNP R+ +  P   SR+  S    + RG    G +   + GN 
Sbjct: 415 IFSYGVGSENGITVEASKNPNRKSL--PRSTSRARRSSLSNLTRGFYWHGNENSSSGGNE 472

Query: 238 F--DFTTKLLHLAWHPTENSIACAAANSLYMYYA 269
           F  D T+KLLHLAWHPT N IAC++ NSLYMYYA
Sbjct: 473 FSCDLTSKLLHLAWHPTTNMIACSSGNSLYMYYA 506