Jatropha Genome Database

JcCA0304141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.20 - phase: 0 
         (350 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003435 conserved hypothetical protein                          280   1e-75
29801.m003164 Spotted leaf protein, putative                           61   9e-10
28246.m000114 ubiquitin-protein ligase, putative                       49   5e-06

>29794.m003435 conserved hypothetical protein
          Length = 373

 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 169/261 (64%), Positives = 189/261 (72%), Gaps = 18/261 (6%)

Query: 96  WRFPLVNSPLHQHSPAETITQPKTDSPRALVPLPPPIHSDELQELFREAELQLSTGSESE 155
           W+FPLV SPLH  S  +T        P + +PLPPPI+S +LQE+F  AELQLS GSE E
Sbjct: 95  WKFPLVTSPLHPESDPQT-------KPDSTIPLPPPINSTKLQEVFHAAELQLSGGSEHE 147

Query: 156 KLAALHLLERSLVPNPPSDPVCPLELMRGVVVNLKNKAGAKAATKILLALCLAEGNRHXX 215
           KLA+LHLLERSLVPNPPS  VCP +LMR +V NLKNKAGAK ATKILLALCLAE NRH  
Sbjct: 148 KLASLHLLERSLVPNPPSHSVCPPQLMRALVANLKNKAGAKPATKILLALCLAEANRHVA 207

Query: 216 XXXXXXXXXXXXXXXXXXPVAERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEG 275
                             P AERALAALEL CTVEEGAAELR HALA+PVMVA MG++ G
Sbjct: 208 VEAGAVGTIIEVVMELEAPAAERALAALELTCTVEEGAAELRTHALAVPVMVAMMGKVSG 267

Query: 276 RGKEYAISALSVVYGGG---------VLDE--QVHQAPPEEVARAVILALQGDCTARARR 324
           RGKEYAISAL+VVYGGG          +DE  QV  APPEEVARAV+LALQGDCTAR RR
Sbjct: 268 RGKEYAISALAVVYGGGGGEGGGGLVAVDEEVQVQHAPPEEVARAVVLALQGDCTARGRR 327

Query: 325 KGAQLLKALQEFGRADSTQQD 345
           KG QLLKAL+E+GR +   Q+
Sbjct: 328 KGHQLLKALEEYGRYEFRLQN 348



 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 24/27 (88%), Positives = 25/27 (92%)

Query: 1  MRTHRPKLKTQSRPFFSCGFFRHCTQT 27
          M+TH PKLKTQ RPFFSCGFFRHCTQT
Sbjct: 1  MKTHHPKLKTQPRPFFSCGFFRHCTQT 27


>29801.m003164 Spotted leaf protein, putative
          Length = 420

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 180 ELMRGVVVNLKNKAGA-----KAATKILLALCLAEGNRHXXXXXXXXXXXXXXXXXXXXP 234
           E++ GV+  LK          K   K L ALCL +  RH                     
Sbjct: 234 EIVEGVIELLKRPISNYPRALKIGIKALFALCLVKQTRHKAVSAGAVETLIDRLADFDKC 293

Query: 235 VAERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISAL 285
            AERALA +EL+C V EG AE   HAL +P++V  + ++  R  EYA  AL
Sbjct: 294 DAERALATIELLCRVPEGVAEFAEHALTVPLLVKTILKISDRATEYAAGAL 344


>28246.m000114 ubiquitin-protein ligase, putative
          Length = 436

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%)

Query: 235 VAERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVYGGGVL 294
           + E AL  L+ +C  EEG  E  ++AL  PV+V K+  +     +Y++SA+  +   G  
Sbjct: 316 ICEGALGVLDKLCDCEEGREEAYSNALTWPVLVKKILRVSELATQYSVSAIWKLNKYGRK 375

Query: 295 DEQVHQAPPEEVARAVILALQGDCTARARRKGAQLLKALQEF 336
           ++ + +A      + ++L LQ  C    + K  +LLK +  +
Sbjct: 376 EKVLVEALQVGAFQKLVLLLQVGCGNETKEKATELLKLMNPY 417