Jatropha Genome Database

JcCA0304111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304111.10 - phase: 0 
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008799 cyclin h, putative                                      546   e-156
30120.m000366 g1/s-specific cyclin C, putative                         54   8e-08

>30128.m008799 cyclin h, putative
          Length = 312

 Score =  546 bits (1406), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/322 (81%), Positives = 280/322 (86%), Gaps = 10/322 (3%)

Query: 1   MADFQTSTHRAKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSLSYPEPQVNT 60
           MADFQTSTHR KWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGS+SYPEPQVNT
Sbjct: 1   MADFQTSTHRVKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSISYPEPQVNT 60

Query: 61  AENAYKHSRPKPLSVEEEQFMRVYYEYKLREATALIYFKRFYLQWSVMEHDPKNIMLTCI 120
            +NA KHSRPK LSV+EEQFMR         ATALIYFKRFYLQWSVMEHDPK+IMLTCI
Sbjct: 61  GDNADKHSRPKSLSVDEEQFMR---------ATALIYFKRFYLQWSVMEHDPKHIMLTCI 111

Query: 121 YSACKIEENHVSAEELGKGISQDHHMILNYEMIILQSLEFDLIVYAPYRSVEGFINDMEE 180
           Y+ACKIEENHVSAEELGKGISQDH MILNYEMI+LQSL+FDLIVYAPYRSVEGFINDME+
Sbjct: 112 YAACKIEENHVSAEELGKGISQDHQMILNYEMIVLQSLDFDLIVYAPYRSVEGFINDMED 171

Query: 181 FCHATDDQIQMLKELQSSAVAEVDKIMFTDAPLLFPPGQLALAALRSANEMHQVLDFERY 240
           FCHATDDQ QMLK+LQ SAVAEVDKIMFTDAPLLFPPGQLALAALRSAN MH+VLDFERY
Sbjct: 172 FCHATDDQTQMLKDLQVSAVAEVDKIMFTDAPLLFPPGQLALAALRSANGMHRVLDFERY 231

Query: 241 LGDILARQNSIHTMSDLFESLDAINSWVKKYKFPTEKDMKHINRKLKSCWGXXXXXXXXX 300
           L DIL+RQN +HT+S+L ESLDAI+SWVKKYKFPTEKDMKHINRKLKSCWG         
Sbjct: 232 LRDILSRQNLVHTISNLTESLDAIDSWVKKYKFPTEKDMKHINRKLKSCWG-HSSHDEKN 290

Query: 301 XXXXXXXXXXXXXNEMQNGPSL 322
                        NEMQNGPS+
Sbjct: 291 REKKSKHKSHKSSNEMQNGPSM 312


>30120.m000366 g1/s-specific cyclin C, putative
          Length = 185

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 19/140 (13%)

Query: 99  KRFYLQWSVMEHDPKNIMLTCIYSACKIEENHVSAEEL----GKGISQDHHM-----ILN 149
           +R Y + S+ E+DP+ +  TC+Y A K EE+ V A  L     K  S + +      IL 
Sbjct: 2   RRVYTRKSMSEYDPRLVAPTCLYLAAKAEESTVQARLLVFYIRKLYSDEKYRYEIKDILE 61

Query: 150 YEMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAEVDKIMFT 209
            EM IL++L + L+V+ PYRS+   + D      A    I M+ +L    V +  K+   
Sbjct: 62  MEMKILEALNYYLVVFHPYRSLSQLLQD------AGIHDINMI-QLSWGLVNDTYKM--- 111

Query: 210 DAPLLFPPGQLALAALRSAN 229
           D  L+ PP  +ALA +  A+
Sbjct: 112 DLILIHPPHLIALACIYIAS 131