Jatropha Genome Database

JcCA0303171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.20 - phase: 0 /partial
         (286 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29941.m000227 galactono-1,4-lactone dehydrogenase, putative           533   e-152

>29941.m000227 galactono-1,4-lactone dehydrogenase, putative
          Length = 603

 Score =  533 bits (1372), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/286 (89%), Positives = 267/286 (93%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ
Sbjct: 219 VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 278

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVV+VTCNP+SKWKGPPK
Sbjct: 279 CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVVVTCNPVSKWKGPPK 338

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
           FKPKYS+DEAI+HVRDLYKESL+KYRTG +A K+VD DE +INELSFTELRDKLLAL PL
Sbjct: 339 FKPKYSQDEAIQHVRDLYKESLEKYRTGVVAGKSVDNDEMDINELSFTELRDKLLALAPL 398

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           NKDHVIKVN AEAEFW+KSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE
Sbjct: 399 NKDHVIKVNLAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 458

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTACXXXXXXXXXXXXKDDIFSW 286
           YIEELKQLI+KE+IPAPAPIEQRWTA             +DDIFSW
Sbjct: 459 YIEELKQLIEKEEIPAPAPIEQRWTARSQSSMSPASSSAEDDIFSW 504