Jatropha Genome Database

JcCA0303171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.10 - phase: 2 /TE/partial
         (248 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27894.m000809 conserved hypothetical protein                           96   1e-20
50372.m000011 conserved hypothetical protein                           54   5e-08

>27894.m000809 conserved hypothetical protein
          Length = 188

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%)

Query: 86  FDSNLPLEGRNHFKPLYIQVAVNGHETRNVMVDNGSALCVCPLKMLSKFKIEESKLEPSN 145
            D  LPLEGR H +PLYI+  V G ++  VMVD+ S + +CPL+ L K+ +E++ LEP++
Sbjct: 1   MDKELPLEGREHNQPLYIEAMVKGIKSSCVMVDDRSRINICPLRFLDKYGLEKTDLEPTS 60

Query: 146 MVVKAYDNTMRNAKGTFRAKISMGTIESWIDVVVLDILANYTLL 189
            V++A D + R A  TF+A + +  IES  +++VLDIL ++   
Sbjct: 61  TVIRACDESKRQACRTFKALVKLRPIESVTELMVLDILISFAFF 104


>50372.m000011 conserved hypothetical protein
          Length = 123

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 179 VLDILANYTLLLGRPWLHPLGAIPSTLHRKVKVPWGTDVV 218
           VLDI A++ LLLGRPW+H L A+PSTLH+KVK   G  V+
Sbjct: 1   VLDIPASFNLLLGRPWIHALEAVPSTLHQKVKFIQGNRVI 40