Jatropha Genome Database

JcCA0302891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302891.20 + phase: 1 /TE/pseudo/partial
         (236 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28909.m000100 conserved hypothetical protein                           69   2e-12
30223.m000144 conserved hypothetical protein                           68   4e-12
30138.m003887 conserved hypothetical protein                           67   8e-12
28455.m000373 hypothetical protein                                     61   4e-10
30170.m013664 conserved hypothetical protein                           61   5e-10
29733.m000764 conserved hypothetical protein                           55   2e-08
29578.m000202 hypothetical protein                                     55   3e-08

>28909.m000100 conserved hypothetical protein
          Length = 167

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           +VK+A +  +G+ +QWH  F+K +G      WEEYVK L +RF  +A++DP+ +L++L Q
Sbjct: 89  QVKLATIHMEGRTLQWHQSFIKNRGTTDEPPWEEYVKALKSRFREKAYEDPIVDLKSLAQ 148

Query: 67  NNSLQQYLDSFNEL 80
              LQ Y++ F+ L
Sbjct: 149 IGPLQDYMEEFDIL 162


>30223.m000144 conserved hypothetical protein
          Length = 322

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 10/92 (10%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           ++K+A++  +G+A+       KL GE     WEEYV  L  RF  +A++DP+A+L+ L Q
Sbjct: 163 RMKLASIHMEGRALN------KL-GE---PPWEEYVLALKGRFGEKAYEDPMADLKGLIQ 212

Query: 67  NNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
             +LQ+Y++SF  L  K  ++E+ +LS FLSG
Sbjct: 213 TGTLQEYMESFEVLSHKVTLSEDYSLSCFLSG 244


>30138.m003887 conserved hypothetical protein
          Length = 188

 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 53/78 (67%)

Query: 6   NKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           ++VK+A++  +G+A+QWH  F+K +GE     W++YV+ +  RF  +A++DP+A+L+ L 
Sbjct: 72  SQVKLASIHLEGRALQWHQTFIKNRGELGEPPWDDYVRAIKCRFGVRAYEDPMADLKMLV 131

Query: 66  QNNSLQQYLDSFNELYPK 83
           Q  S+  YL+ F+ L  K
Sbjct: 132 QIGSVSDYLEEFDVLSHK 149


>28455.m000373 hypothetical protein
          Length = 295

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query: 6   NKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           ++VK+A +  +G+A+QWH  F+K +GE     W +YV+ +  RF  + + DP+A+L+ L 
Sbjct: 144 SQVKLALIHLEGRALQWHQTFIKNRGELGEPPWNDYVRAIKCRFRVRTYKDPMADLKMLV 203

Query: 66  QNNSLQQYLDSFNELYPK 83
           Q  S+  YL+ F+ L  K
Sbjct: 204 QIGSVSDYLEEFDVLSHK 221


>30170.m013664 conserved hypothetical protein
          Length = 181

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 43/60 (71%)

Query: 39 EEYVKFLNARFXNQAFDDPLAELRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
          +EY++ L  RF  + ++DP+A+L+ L Q  +LQ+YL++F+ L  K  + E+ +L+FFLSG
Sbjct: 10 DEYIEALKGRFGEKIYEDPMADLKGLMQTGTLQEYLEAFDSLSHKVTLPEDYSLNFFLSG 69


>29733.m000764 conserved hypothetical protein
          Length = 107

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 4  PKN-KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELR 62
          P N K+K+ A+  +G+A +                WEEYV+ L  RF  + ++DP+A+L+
Sbjct: 5  PANAKLKLVAIHMEGRAFKVE-----------EPPWEEYVEALKGRFGERIYEDPMADLK 53

Query: 63 NLRQNNSLQQYLDSFNELYPKAGITENQALSFFL 96
           L Q  +L +YL+ F+ L  K    E+ +LS FL
Sbjct: 54 GLVQIGTLHEYLEEFDILSQKVTFFEHYSLSCFL 87


>29578.m000202 hypothetical protein
          Length = 247

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%)

Query: 7  KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNL 64
          KVK+AA+  +G+A+QWH  F+K + +     W EYV+ L  RF  + ++DP+A+L++L
Sbjct: 39 KVKLAAIHMEGRALQWHKSFIKNRNKLEEPPWVEYVEALKGRFGEKVYEDPMADLKSL 96