Jatropha Genome Database

JcCA0302361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302361.20 + phase: 0 
         (232 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008755 conserved hypothetical protein                          155   1e-38

>30128.m008755 conserved hypothetical protein
          Length = 236

 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 1   MPMPFDFKFQPPLPKYSPLLNAIGKIIVSYHQ----RVDXXXXXXXXXXXXXXXHQTQIW 56
           MP  F FK QP + K    LN I KII++Y Q                      H+T I 
Sbjct: 1   MPTTFHFKSQPFISKGLLGLNPIEKIIITYPQCNSFSFSSKSPLFYSWPLVSLSHKTHIP 60

Query: 57  NPIVCASKKRRGSGSQKLSKIVPKLVYIAASNLKILPEPFNLVIAEXXXXXXXXXXXXXX 116
            P++CA KKRRGSG QKL KI+PKL  IAASNLKILPEPFNLVIAE              
Sbjct: 61  KPVLCARKKRRGSGFQKLKKILPKLASIAASNLKILPEPFNLVIAEFSGGGGGGDGGGGS 120

Query: 117 XXXXNSDGWRR-RKNTNXXXXXXXXXXXXXXXXXXREQLKCEVFLCGVLASGLLVTVLIK 175
                 DGWRR RKN N                  ++ LK + F  GVLA G  +T+LIK
Sbjct: 121 WFWRGFDGWRRKRKNINFWFLGFLIVCGLGKVLLGKD-LKKDAFY-GVLALGSSLTILIK 178

Query: 176 GNKKRLKNWVLGICLVGALMGLRLRRKEMQQWLHRLSVCLPALELV 221
           G +K +K  VL +C VGALMGLRL+R++MQQW+ ++  C PA +L 
Sbjct: 179 GFRKAVKYLVLELCFVGALMGLRLKRQDMQQWVQKVRDCTPAFQLA 224