Jatropha Genome Database

JcCA0302331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302331.10 + phase: 2 /partial
         (356 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29675.m000392 glutamine synthetase plant, putative                    600   e-172
29726.m003921 glutamine synthetase plant, putative                    565   e-161
56871.m000011 glutamine synthetase plant, putative                     97   1e-20

>29675.m000392 glutamine synthetase plant, putative
          Length = 356

 Score =  600 bits (1548), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 284/343 (82%), Positives = 315/343 (91%)

Query: 14  ETTDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILY 73
           ++TDKIIAEYIWIGGSG+DLRSK+RTL GPVSDPSKLPKWNYDGSST QA G++SEVILY
Sbjct: 14  DSTDKIIAEYIWIGGSGLDLRSKSRTLPGPVSDPSKLPKWNYDGSSTDQATGDNSEVILY 73

Query: 74  PQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYT 133
           PQAIF+DPFRRGNNILV+CD+YTPAG+P+PTNKR  AAKIFSHPD+ AE PWYGIEQEYT
Sbjct: 74  PQAIFKDPFRRGNNILVMCDSYTPAGDPLPTNKRFNAAKIFSHPDIAAEEPWYGIEQEYT 133

Query: 134 LLQKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEV 193
           LLQKD+K                YYCGVGADK+FGR+IVD+H+KACL+AG++ISGINGEV
Sbjct: 134 LLQKDVKWPIGWPVGGFPSPQGPYYCGVGADKAFGRNIVDSHFKACLFAGISISGINGEV 193

Query: 194 MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS 253
           MPGQWEFQVGPAVGISA DELW+ARYILERITEIAGV+L+FDPKPIQGDWNGAGAHTN+S
Sbjct: 194 MPGQWEFQVGPAVGISASDELWMARYILERITEIAGVILTFDPKPIQGDWNGAGAHTNFS 253

Query: 254 TKSMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGA 313
           TKSMR+DGG +VIKKAIEKLG RHK+HIAAYG+GNERRLTGRHETADINTF WGVA+RGA
Sbjct: 254 TKSMRSDGGIDVIKKAIEKLGQRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGA 313

Query: 314 SVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           SVRVGRDTEK GKGYFEDRRP+SNMDPY+VTSMIAETTILWKP
Sbjct: 314 SVRVGRDTEKNGKGYFEDRRPSSNMDPYIVTSMIAETTILWKP 356


>29726.m003921 glutamine synthetase plant, putative
          Length = 432

 Score =  565 bits (1456), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/341 (78%), Positives = 298/341 (87%)

Query: 16  TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           TD+IIAEYIWIGGSG+D+RSK+RT+S PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 76  TDRIIAEYIWIGGSGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQ 135

Query: 76  AIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLL 135
           AIF+DPFR GNNILVICD+YTPAGEPIPTNKR+ AA+IFS   VV EVPW+GIEQEYTLL
Sbjct: 136 AIFKDPFRGGNNILVICDSYTPAGEPIPTNKRNRAAEIFSSKKVVDEVPWFGIEQEYTLL 195

Query: 136 QKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEVMP 195
           Q ++K                YYCG GADKSFGRDI DAHYKACLYAG+NISG NGEVMP
Sbjct: 196 QPNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMP 255

Query: 196 GQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTK 255
           GQWE+QVGP+VGI AGD +W +RYILERITE AGV+L+ DPKPI+GDWNGAG HTNYSTK
Sbjct: 256 GQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVILTLDPKPIEGDWNGAGCHTNYSTK 315

Query: 256 SMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGASV 315
           SMR++GGYEVIKKAI  L LRHK+HI+AYGEGNERRLTG+HETA I+TF WGVA+RG S+
Sbjct: 316 SMRDEGGYEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSI 375

Query: 316 RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           RVGRDTEK GKGY EDRRPASNMDPYVVTS++AETTILW+P
Sbjct: 376 RVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 416


>56871.m000011 glutamine synthetase plant, putative
          Length = 55

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 18 KIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIL 72
          K + ++  IGGSGMD+RSKARTL GPVSDPSKLPKWNYDGSSTGQAPGEDSEVIL
Sbjct: 1  KPLVDFFVIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIL 55