Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302271.10 + phase: 0 
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004656 Cytochrome c oxidase polypeptide Vc, putative            94   1e-20
29647.m002048 Cytochrome c oxidase polypeptide Vc, putative            94   1e-20
29933.m001407 Cytochrome c oxidase polypeptide Vc-2, putative          61   1e-10

>30076.m004656 Cytochrome c oxidase polypeptide Vc, putative
          Length = 63

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 48/63 (76%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAGG+IAHATLKGPSVVKE              WKMHHWNEQRKVRAFYDLLEKGEISVV
Sbjct: 1  MAGGRIAHATLKGPSVVKEICIGIALGLAAGGLWKMHHWNEQRKVRAFYDLLEKGEISVV 60

Query: 61 VDE 63
           +E
Sbjct: 61 AEE 63


>29647.m002048 Cytochrome c oxidase polypeptide Vc, putative
          Length = 63

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 48/63 (76%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAGG+IAHATLKGPSVVKE              WKMHHWNEQRKVRAFYDLLEKGEISVV
Sbjct: 1  MAGGRIAHATLKGPSVVKEICIGIALGLAAGGLWKMHHWNEQRKVRAFYDLLEKGEISVV 60

Query: 61 VDE 63
           +E
Sbjct: 61 AEE 63


>29933.m001407 Cytochrome c oxidase polypeptide Vc-2, putative
          Length = 65

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query: 12 KGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVVVDE 63
           GPS++KE              WKMHHWN Q++ + FYDLLE+GEISVVV++
Sbjct: 13 NGPSIIKEIIYGISLGLGAGLLWKMHHWNNQKRAKEFYDLLERGEISVVVED 64