Jatropha Genome Database

JcCA0302221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.20 - phase: 0 /partial
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30041.m000240 isopropylmalate synthase, putative                      267   2e-72
34620.m000030 conserved hypothetical protein                           56   8e-09

>30041.m000240 isopropylmalate synthase, putative
          Length = 632

 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 150/169 (88%), Gaps = 3/169 (1%)

Query: 3   QRVTDADLLALVSDEVFQPEIVWQLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGTG 62
           +RVTDADL+ALVSDEVFQPEIVW+LGDLQ+TCGTLGLSTATVKLI+A+GE+HIACSVG+G
Sbjct: 465 KRVTDADLIALVSDEVFQPEIVWKLGDLQVTCGTLGLSTATVKLINADGEEHIACSVGSG 524

Query: 63  PVDAAYKAVDLIVKEPVELLEYSMTAVTGGIDAIATTRVLICG-DNH-KIDAITGEPSRR 120
           PVDA YKAVDLIVKEPVELLEYSM AVT GIDAIATTRVLI   DNH    A+TGEP +R
Sbjct: 525 PVDAGYKAVDLIVKEPVELLEYSMNAVTEGIDAIATTRVLIRREDNHTSTHALTGEPFQR 584

Query: 121 TFSGSGAGMDIVVSSVKAYIGALNKMLAVNSQQLSTTKTVSTVRTPVSA 169
           TFSGSGAGMDIVVSSVKAY+GALNKMLA+  QQ  T +  ST RTPVSA
Sbjct: 585 TFSGSGAGMDIVVSSVKAYVGALNKMLALK-QQFLTKRVSSTDRTPVSA 632


>34620.m000030 conserved hypothetical protein
          Length = 124

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 26  QLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGTGPVDAAYKAVDLIVKEPVELLEYS 85
           ++  L++  GT G S      +D +G+   A + G GPVDA + A+  IV     L  + 
Sbjct: 2   RVSHLRVVAGTEGQSAELT--LDVDGQAKSAEASGDGPVDAVFNAIHKIVPHSAALRLFQ 59

Query: 86  MTAVTGGIDAIATTRVLICGDNHKIDAITGEPSRRTFSGSGAGMDIVVSSVKAYIGALNK 145
           + AVT G DA A   V +            E   R  +G+ A  D + +S KAY+ ALN 
Sbjct: 60  VHAVTEGTDAQAQVSVRL------------EEDGRIATGAAADTDTLTASAKAYVNALNN 107

Query: 146 MLA 148
           + A
Sbjct: 108 LFA 110