Jatropha Genome Database

JcCA0302101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302101.20 + phase: 0 /partial
         (246 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative         461   e-130

>30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 791

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 212/239 (88%), Positives = 228/239 (95%)

Query: 1   MELLRSNLSRVRIPEPTNRIYKDECCISFDTPRSEGGLYVDMNTFLAFGKDSVGWNYEKT 60
           MELLRSNLSRVRIPEPTNRI+K ECCISFDTPRSEGGL++DMNTFLAFGKD VGWNYEKT
Sbjct: 1   MELLRSNLSRVRIPEPTNRIFKHECCISFDTPRSEGGLFIDMNTFLAFGKDCVGWNYEKT 60

Query: 61  GDAVYLHIKQTRKLVPEDRPSKKPTLLAIGVEGGFDNNEPEYEEIYSIVILPDYVTFPFP 120
           G+ VYLHIKQT KL+PEDRPSKKPTLLAIG+EGGFDNNEP+YEE +SIVILPDYVTF FP
Sbjct: 61  GNPVYLHIKQTAKLIPEDRPSKKPTLLAIGIEGGFDNNEPDYEETHSIVILPDYVTFEFP 120

Query: 121 SVDLPEKVRLAVDAILMAESAERKEQLAAWTADKKQISAYAMNLPQIDNGVIVPPSGWKC 180
           SV+LPEKVRLA DAILMAE AERKEQLAAWTADKKQIS+YAMNL QIDNGVIVPPSGWKC
Sbjct: 121 SVELPEKVRLAADAILMAEGAERKEQLAAWTADKKQISSYAMNLQQIDNGVIVPPSGWKC 180

Query: 181 AKCEKRENLWLNLSDGTILCGRRNWDGSGGNNHAIEHYKETSYPLAVKLGTITADLEAA 239
           +KC+K+ENLWLNL+DG ILCGR+NWDGSGGNNHAIEHYKET YPLA+KLGTITADLEAA
Sbjct: 181 SKCDKKENLWLNLTDGMILCGRKNWDGSGGNNHAIEHYKETGYPLAIKLGTITADLEAA 239