Jatropha Genome Database

JcCA0302081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302081.20 - phase: 0 
         (231 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014188 Methylosome subunit pICln, putative                     347   3e-96

>30147.m014188 Methylosome subunit pICln, putative
          Length = 230

 Score =  347 bits (890), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 187/230 (81%)

Query: 1   MVLGLRQFTDRRGDGAGEPVLDTDNGEELMHVQPGVAIVIGNRSPESHGTLYISTKKVVW 60
           MVLGLRQFT+RRGDG GEPVLDT+NGEELMHVQPGVA+VIGNRS ES GTL+ISTKKV+W
Sbjct: 1   MVLGLRQFTERRGDGTGEPVLDTENGEELMHVQPGVAVVIGNRSAESSGTLFISTKKVIW 60

Query: 61  LSDVDRAKGYSVDFLNLSLHAVSRDPEAYSSPCIYTQIXXXXXXXXXXXXXXXXXXXXXX 120
           LSDVDRAKGY+V FL++SLHAVSRDPEAY SPCIYTQI                      
Sbjct: 61  LSDVDRAKGYAVGFLSISLHAVSRDPEAYPSPCIYTQIETKADEDESDSSDSESNEIFDL 120

Query: 121 XKITEMRLVPSDPSQLDTLFQIFCECAELNPEPVDEAEEEGHNWVFSADQMVDDTAELED 180
            K+TEMR VPSDP+QLDTLFQIFC+CAELNPEP++E +E G+NWVFSADQM  D AE +D
Sbjct: 121 AKVTEMRFVPSDPTQLDTLFQIFCQCAELNPEPLNEDDEGGNNWVFSADQMAGDDAEDDD 180

Query: 181 SECYFSQNPTSSIGHSNGDHDVARRVLELQINDQRFEDPEEMEHGSDGGH 230
            E +FSQNPTSSIGHSNGDHDVARRVLELQINDQRFEDP+EM+      H
Sbjct: 181 PEWHFSQNPTSSIGHSNGDHDVARRVLELQINDQRFEDPDEMDQEDRSSH 230