Jatropha Genome Database

JcCA0301151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.20 + phase: 0 /partial
         (247 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003591 conserved hypothetical protein                          139   1e-33

>29842.m003591 conserved hypothetical protein
          Length = 1399

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 106/170 (62%), Gaps = 11/170 (6%)

Query: 49  FNPFLKGTXXXXXXXXXXXXVEGLDGNSSKPTTGEVRNYAVGDSEHGEEVVMRT--AFSS 106
           FNPFLKGT            VE LDGNSSK  T EV+NY VGDSEHGE VVM+   AF +
Sbjct: 41  FNPFLKGTPSPEASSSLSSEVEELDGNSSKTITAEVQNYDVGDSEHGEMVVMQNAHAFCA 100

Query: 107 ESEKETQSSIHRRSKRKSDFVSQLENVSVRQK--ENSFSKPSMNLDDEDAIWKRTRARYS 164
           ESEK++Q  + +  KRKSD VSQ  N S+R+   EN        LDDEDAIWKRTRARYS
Sbjct: 101 ESEKQSQ-VLKKSKKRKSDSVSQSGNESIRENVDENDC------LDDEDAIWKRTRARYS 153

Query: 165 LASFTLDELETFLQXXXXXXXXXXXXXXXXYRKFLAAVLQXXXXXXQSTQ 214
           LASFTLDELETFLQ                YRKFLAAVLQ      QST+
Sbjct: 154 LASFTLDELETFLQETDDEDDLQNVDDEEEYRKFLAAVLQGGDGDGQSTR 203