Jatropha Genome Database

JcCA0300071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300071.10 - phase: 0 
         (321 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002052 starch synthase, putative                               171   4e-43
29842.m003588 starch synthase, putative                               134   6e-32
28179.m000474 starch synthase, putative                               132   3e-31
28838.m000254 starch synthase, putative                                68   6e-12

>29693.m002052 starch synthase, putative
          Length = 998

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 8/223 (3%)

Query: 102 MNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDL-ALVT 160
           +++IH+ AEMAP+AKVGGLGDVV GL +A   RGH V I+LP Y+C+Q   I +L AL  
Sbjct: 500 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKRGHLVEIILPKYDCMQYNGIGNLRALDV 559

Query: 161 TYNSYHDGNWVPTNAYRGVVSDIPVIFIEPS--NEFFKGQQVYGGSYNELEAYLFFSRAC 218
           T  SY DG       + G +  +PV FIEP   ++FF   Q YG  +++ + + FFSRA 
Sbjct: 560 TVESYFDGKLYKNKIWVGTIEGLPVYFIEPHHPDKFFWRGQFYG-EHDDFKRFSFFSRAA 618

Query: 219 LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKEQL 278
           LE +  +  +PDIIH H+WQT  +  LYWD+Y    L + R+  T HN E+ G     +L
Sbjct: 619 LELLHQSGKKPDIIHSHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASEL 678

Query: 279 SKSGLDGSIYATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
           +  GLD       ++  D+  + H+  R++ +KG +V+SN V 
Sbjct: 679 ASCGLDVHHLNRPDRMQDN--LAHD--RINPVKGAVVFSNIVT 717


>29842.m003588 starch synthase, putative
          Length = 1095

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 9/197 (4%)

Query: 101 PMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVT 160
           PM+I+HV  EMAPIAKVGGLGDVVT L+RA     H+V I+LP Y+C+    + D+    
Sbjct: 646 PMHIVHVAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMNLTHVKDIHYQK 705

Query: 161 TYNSYHDGNWVPT--NAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRAC 218
           +Y      +W  T    + G V  + V F+EP N  F    +Y G  N+ E + FF  A 
Sbjct: 706 SY------SWGGTEIKVWFGKVEGLSVYFLEPQNGMFWTGCIY-GCRNDGERFGFFCHAA 758

Query: 219 LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKEQL 278
           LE++Q +   PDIIH H+W +  +  L+ D Y +  L   RVV TIHN+E         +
Sbjct: 759 LEFLQQSGFHPDIIHCHDWSSAPVAWLFKDHYMHYGLSKARVVFTIHNLEFGANNIGRAM 818

Query: 279 SKSGLDGSIYATVEKAV 295
           + S +  ++  T  + V
Sbjct: 819 AYSDMATTVSPTYSREV 835


>28179.m000474 starch synthase, putative
          Length = 720

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 8/223 (3%)

Query: 102 MNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVTT 161
           ++I+H+  EMAP+ +VG L   VTGL+ A   +GH V ++LP Y  +   +I  L  +  
Sbjct: 207 LHIVHICTEMAPVTEVGYLASYVTGLSLALQKKGHLVEVILPKYASLNLSEIHGLQEIQA 266

Query: 162 YN-SYHDGNWVPTNAYRGVVSDIPVIFIEP--SNEFFKGQQVYGGSYNELEAYLFFSRAC 218
            + SY +G       + GVV+ I V FI+P   + FF  +++YG + ++ E + +FSRA 
Sbjct: 267 ESYSYFNGQLHGNKIWTGVVNGIGVTFIQPLYYSSFFNREKIYGYT-DDFERFSYFSRAS 325

Query: 219 LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKEQL 278
           L+++  +  QPD++H+H W+T  +  L+WD++    L+  R++LT H+++     + + L
Sbjct: 326 LDFLTKSGKQPDVLHIHNWETAIVGPLFWDVFAKQGLEGTRILLTCHSLDSQCLEKPDML 385

Query: 279 SKSGLDGSIYATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
           +  GLD        +  D+       + +++LKGGIVYSN VV
Sbjct: 386 ALCGLDPGRLHRPNRLQDNAKT----QFVNILKGGIVYSNKVV 424


>28838.m000254 starch synthase, putative
          Length = 754

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 99  SNPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLAL 158
           +N MN+I V+AE AP +K GGLGDV   L +A   RGH V ++ P Y    + Q  D+ +
Sbjct: 260 ANVMNVILVSAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAETQ--DIGV 317

Query: 159 VTTYNSYHDGNWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNE-LEAYLFFSRA 217
              Y    DG       ++  +  +  +FIE          +YGG+  + L+  + F +A
Sbjct: 318 RKRYKV--DGQDFEVTYFQAFIDGVDFVFIECPMFRHIESNIYGGNRVDILKRMVLFCKA 375

Query: 218 CLE--WM----QVTEIQPDIIHV-HEWQTGGLPLLYWDMYHYLSLKN-PRVVLTIHNMEH 269
            +E  W      +     +++ + ++W T  LP+     Y    L    R VL IHN+ H
Sbjct: 376 AIEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLRAYYRDNGLMQFTRSVLVIHNIAH 435

Query: 270 YG 271
            G
Sbjct: 436 QG 437