Jatropha Genome Database

JcCA0299751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299751.10 - phase: 1 /pseudo/partial
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011235 potassium channel tetramerization domain-containin...    46   4e-06

>30190.m011235 potassium channel tetramerization
           domain-containingprotein, putative
          Length = 474

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%), Gaps = 1/28 (3%)

Query: 73  FYTELRKLGSG-NNNLWVCLGDNRKVMN 99
           FYT+LRKLG G ++N W CLGDNRKV+N
Sbjct: 353 FYTDLRKLGDGESSNPWTCLGDNRKVLN 380