Jatropha Genome Database

JcCA0299231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299231.10 - phase: 0 /partial
         (565 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002047 stromal antigen, putative                              1006   0.0  
27942.m000159 stromal antigen, putative                               713   0.0  

>29647.m002047 stromal antigen, putative
          Length = 1106

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/552 (88%), Positives = 523/552 (94%), Gaps = 1/552 (0%)

Query: 1    DWKCIISILLDENPQVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEI 60
            DWKCIIS+LLDENP VELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKE+
Sbjct: 473  DWKCIISMLLDENPLVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEV 532

Query: 61   FENNRRDITIAMMKNFPLLLRKFTADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 120
            FENNR+DITIAMMKN+PLLLRKF ADKAK+PSLVEIIVHMNLELYSLKRQEQNFKNVLQL
Sbjct: 533  FENNRKDITIAMMKNYPLLLRKFMADKAKIPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 592

Query: 121  IKEAFFKHGEKEALRSCVKAITFCSTESQGELKDFACNKLKNLEDELIAKLKSALKEAAD 180
            +KE+FFKHGEKEALRSCVKAI FCSTESQGELKDFA NKLKNLEDELIAKLKSA+KEA  
Sbjct: 593  MKESFFKHGEKEALRSCVKAILFCSTESQGELKDFAGNKLKNLEDELIAKLKSAMKEAVG 652

Query: 181  GDEYSLLVNLKRLYELQLSRAVPIESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAWS 240
            GDEYSLLVNLKRLYELQLS+AVPIES+++DIV+++H FRNVDD+VVSFLLLNMYLHVAWS
Sbjct: 653  GDEYSLLVNLKRLYELQLSKAVPIESIFEDIVKVIHSFRNVDDDVVSFLLLNMYLHVAWS 712

Query: 241  LQSIVNSETVSEAQLSSLLSKRNVLFEELEYFLITPSNEERVSKYANQLACRVCIILAEA 300
            LQSIVNSET+SEAQLSSLLSKRN+LFEELEYFL TPS E +V+KY+N LACRVCIILAEA
Sbjct: 713  LQSIVNSETISEAQLSSLLSKRNILFEELEYFLGTPSEEAKVNKYSNHLACRVCIILAEA 772

Query: 301  WCLFRQTNFSSTKLESLGYCPDTSVLQKFWRLSEQQLNISDETEDEDSNKEYIEETNRDA 360
            WCLFR TNFSSTKLESLG CPDTSV+QKFW L EQQLNISDET+DED+NKEYIEETNRDA
Sbjct: 773  WCLFRHTNFSSTKLESLGCCPDTSVVQKFWELCEQQLNISDETDDEDTNKEYIEETNRDA 832

Query: 361  VVIAAAKLVASGTVSKEYLAPEIISHFVMHGTSIAEIVKHLITVIKKKDDDTTNIFLEAL 420
            V+IAAAKL+AS TVSKE LAP IISHFVMHGTS+AEIVKHL+T+IKKKDDD +NIFLEAL
Sbjct: 833  VMIAAAKLIASDTVSKESLAPGIISHFVMHGTSVAEIVKHLLTIIKKKDDDISNIFLEAL 892

Query: 421  KRAHHRHLEELSRSDDGSV-GKSFQECKDLAARLSATFMGAARNKHRADILKIVKEGIEY 479
            KRAH  HLEELS+SDDGSV  KSFQ+CKDLAARLS TFMGAARNKHRADILKI+KEGIEY
Sbjct: 893  KRAHQWHLEELSKSDDGSVLRKSFQDCKDLAARLSGTFMGAARNKHRADILKIIKEGIEY 952

Query: 480  AFIDSPKQLSFLEGAVLHFVSKLPTSDVLEILKDVQSRTENVNTDEDPSGWRPYHTFVDN 539
            AF D+PKQLSFLE A+LHFVSKLPT DVLEILKDVQSRTENVNTDEDPSGWRPY TFVDN
Sbjct: 953  AFKDAPKQLSFLESAMLHFVSKLPTPDVLEILKDVQSRTENVNTDEDPSGWRPYFTFVDN 1012

Query: 540  LREKYAKNDGFP 551
            LREKYAKN+G P
Sbjct: 1013 LREKYAKNEGLP 1024


>27942.m000159 stromal antigen, putative
          Length = 456

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/468 (76%), Positives = 394/468 (84%), Gaps = 39/468 (8%)

Query: 85  ADKAKVPSLVEIIVHMNLELYSLKRQEQNFKNVLQLIKEAFFKHGEKEALRSCVKAITFC 144
           ADKAK+PS VEIIVHMNLELYSLKRQEQNFKNVLQL+K +FFKHGEKEALRSCVKAI FC
Sbjct: 2   ADKAKIPSFVEIIVHMNLELYSLKRQEQNFKNVLQLMKGSFFKHGEKEALRSCVKAILFC 61

Query: 145 STESQGELKDFACNKLKNLEDELIAKLKSALKEAADGDEYSLLVNLKRLYELQLSRAVPI 204
           STESQGELKDFA NKLKNLEDELIAKLKSA+KEA  GDEY LLVNLKRLYELQLS+ VPI
Sbjct: 62  STESQGELKDFAGNKLKNLEDELIAKLKSAMKEAVGGDEYFLLVNLKRLYELQLSKVVPI 121

Query: 205 ESLYDDIVRILHYFRNVDDEVVSFLLLNMYLHVAWSLQSIVNSETVSEAQLSSLLSKRNV 264
           ES+++DIV+++H FRNVDD+VVSFLLLNMYLHVAWSLQSIVNSET+SEAQLSSLLSK N+
Sbjct: 122 ESIFEDIVKVIHNFRNVDDDVVSFLLLNMYLHVAWSLQSIVNSETISEAQLSSLLSKCNI 181

Query: 265 LFEELEYFLITPSNEERVSKYANQLACRVCIILAEAWCLFRQTNFSSTKLESLGYCPDTS 324
           LFEELEYFL TPS E +V+KY+N LACR                                
Sbjct: 182 LFEELEYFLRTPSEETKVNKYSNLLACR-------------------------------- 209

Query: 325 VLQKFWRLSEQQLNISDETEDEDSNKEYIEETNRDAVVIAAAKLVASGTVSKEYLAPEII 384
                  L EQQLNISDET+DED+NKEYIE+TNRDAV+IAA KL AS TVSKE LAP II
Sbjct: 210 ------ELCEQQLNISDETDDEDTNKEYIEKTNRDAVMIAATKLTASDTVSKESLAPGII 263

Query: 385 SHFVMHGTSIAEIVKHLITVIKKKDDDTTNIFLEALKRAHHRHLEELSRSDDGSV-GKSF 443
           SHFVMHGTS+AEIVKHL+T+IKKKDDD +NIFLEALKRAH  HLEELS+SD GSV  KSF
Sbjct: 264 SHFVMHGTSVAEIVKHLLTIIKKKDDDISNIFLEALKRAHQWHLEELSKSDGGSVIRKSF 323

Query: 444 QECKDLAARLSATFMGAARNKHRADILKIVKEGIEYAFIDSPKQLSFLEGAVLHFVSKLP 503
           Q+CKDLA RLS TFMGAA NKHRADILKI+KEGIEYAF ++PKQLSFLE A+LHFVSKLP
Sbjct: 324 QDCKDLADRLSGTFMGAAWNKHRADILKIIKEGIEYAFKNAPKQLSFLESAMLHFVSKLP 383

Query: 504 TSDVLEILKDVQSRTENVNTDEDPSGWRPYHTFVDNLREKYAKNDGFP 551
           T  VLEILKDVQSRT+NVNTDEDP+GWRPY TFVDNLREKYAKN+G P
Sbjct: 384 TPAVLEILKDVQSRTKNVNTDEDPNGWRPYFTFVDNLREKYAKNEGLP 431