Jatropha Genome Database

JcCA0299021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299021.10 + phase: 0 
         (337 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29625.m000721 conserved hypothetical protein                          375   e-104

>29625.m000721 conserved hypothetical protein
          Length = 344

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/249 (75%), Positives = 205/249 (82%), Gaps = 14/249 (5%)

Query: 69  AIKSGQFLNILGAAPALFFRLGTGVFVNGYSASFVSKNEIPPGQYALEVAGYKVKESSKV 128
            +K G+ L+ILGA+ AL FRLGTGVFV+GYSASFVSK+EIPP QYAL  AGYKVKE+SK+
Sbjct: 75  TVKPGKTLDILGASLALLFRLGTGVFVSGYSASFVSKDEIPPDQYALGAAGYKVKETSKL 134

Query: 129 GPRPEKPIEIYEFESFLLMFASNCKYV-QVREIVSVLDIDVLFYPCPKNGPTFRPKVVQM 187
           GPRPEKPIEIYEFES        C +  +VREIV+VLDIDVLFYPCPK+GPTFRPK +Q+
Sbjct: 135 GPRPEKPIEIYEFES--------CPFCRKVREIVAVLDIDVLFYPCPKDGPTFRPKAIQL 186

Query: 188 GGKQQFPYMVDPNTGTAMYESDDIIKYLVEKYGDGTVPFMXXXXXXXXXXEGFAMIGRMG 247
           GGK+QFPYMVDPNTGTAMYESDDIIKYLV KYGDG VP M           GFAMIGR G
Sbjct: 187 GGKRQFPYMVDPNTGTAMYESDDIIKYLVGKYGDGNVPLMLSLGLFTTLTAGFAMIGRAG 246

Query: 248 KGSSYTPSKLPPKPLEIWSYEGSPFCKIVREALVESELPHI----QRS-CARGSPKRQAL 302
           KGSSYTPS+LPPKPLEIWSYEGSPFCKIVRE LVE ELPHI     RS CARGSPKRQ L
Sbjct: 247 KGSSYTPSRLPPKPLEIWSYEGSPFCKIVRETLVELELPHIXXLRMRSFCARGSPKRQTL 306

Query: 303 YEKAGHFQV 311
           YEKAGHFQV
Sbjct: 307 YEKAGHFQV 315



 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 132 PEKPIEIYEFESFLLMFASNCKYVQVREIVSVLDIDVLFYP-----CPKNGPTFRPKVVQ 186
           P KP+EI+ +E      +  CK V  RE +  L++  +        C +  P  R  + +
Sbjct: 257 PPKPLEIWSYEG-----SPFCKIV--RETLVELELPHIXXLRMRSFCARGSPK-RQTLYE 308

Query: 187 MGGKQQFPYMVDPNTGTAMYESDDIIKYLVEKYG 220
             G  Q PY+ DPNTG  M+ES DI++YL   Y 
Sbjct: 309 KAGHFQVPYLEDPNTGVQMFESADIVEYLRATYA 342