Jatropha Genome Database

JcCA0298471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0298471.10 + phase: 0 
         (68 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000398 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...    62   8e-11
30131.m007140 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...    62   8e-11
29908.m006129 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...    61   9e-11
30170.m014224 vacuolar ATP synthase proteolipid subunit 1, 2, 3,...    61   9e-11

>28623.m000398 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 16  VADAEVELDPANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 68
           V DA V    ANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 116 VGDAGVR---ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165


>30131.m007140 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 16  VADAEVELDPANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 68
           V DA V    ANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 116 VGDAGVR---ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165


>29908.m006129 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 169

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 16  VADAEVELDPANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 68
           V DA V    ANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 120 VGDAGVR---ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 169


>30170.m014224 vacuolar ATP synthase proteolipid subunit 1, 2, 3,
           putative
          Length = 165

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 16  VADAEVELDPANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 68
           V DA V    ANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 116 VGDAGVR---ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165