Jatropha Genome Database

JcCA0297911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.20 - phase: 1 /partial
         (346 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002023 RNA binding protein, putative                           663   0.0  
29628.m000772 RNA binding protein, putative                           450   e-127

>29693.m002023 RNA binding protein, putative
          Length = 681

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/346 (90%), Positives = 333/346 (96%)

Query: 1   KLDSIWRDSIDDGCHNPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQIRKE 60
           K DSIW+DSIDDGCHNPSWPEFVPSSGKEKTRK+DYIRYGGHFLIG+RGPREDAVQ +KE
Sbjct: 336 KSDSIWKDSIDDGCHNPSWPEFVPSSGKEKTRKIDYIRYGGHFLIGVRGPREDAVQTQKE 395

Query: 61  IIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERGVGT 120
           IIEFC+ KLGIRLDNSKIEIEHI+RGIQFLDHIICRRVI+PTLHYTASGGKIVSE+GVGT
Sbjct: 396 IIEFCENKLGIRLDNSKIEIEHISRGIQFLDHIICRRVIHPTLHYTASGGKIVSEKGVGT 455

Query: 121 LLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADWYRY 180
           LLSVTASLQQCIRQFRRL FVKGDKDPEPLPCNPMLYSSQAH+NAQMNKFLETMA+WYRY
Sbjct: 456 LLSVTASLQQCIRQFRRLAFVKGDKDPEPLPCNPMLYSSQAHSNAQMNKFLETMAEWYRY 515

Query: 181 ADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPEYSD 240
           ADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASR+LSRPLRESSN+SAPEYSD
Sbjct: 516 ADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRNLSRPLRESSNSSAPEYSD 575

Query: 241 LLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELWRSI 300
           LLRMGLVDAIEGVQFSHMS IPSCDYTPFPR W+PDHE+VLHEYIRLQDPKFFC+L RSI
Sbjct: 576 LLRMGLVDAIEGVQFSHMSSIPSCDYTPFPRIWVPDHEQVLHEYIRLQDPKFFCDLHRSI 635

Query: 301 KHQSLTLPQDEISEIVWDYKTLGIRRYQSSGEKEPNNASEKLDETS 346
           KHQ LTLPQDEISEIVW+YKTLGIRR QSSGEKE N+  E +D+TS
Sbjct: 636 KHQGLTLPQDEISEIVWEYKTLGIRRNQSSGEKELNSTPENVDKTS 681


>29628.m000772 RNA binding protein, putative
          Length = 732

 Score =  450 bits (1158), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/342 (61%), Positives = 267/342 (78%), Gaps = 2/342 (0%)

Query: 1   KLDSIWRDSIDDGCH-NPSWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDAVQIRK 59
           K D IW     +    N SWPEFVP+SG +KTRKMDYIRYGGH LIG+RGPR DA  +RK
Sbjct: 360 KSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKTRKMDYIRYGGHILIGVRGPRADAATLRK 419

Query: 60  EIIEFCDAKLGIRLDNSKIEIEHITRGIQFLDHIICRRVIYPTLHYTASGGKIVSERGVG 119
           ++I+F D K  ++LDN  + IEHIT+GI FLDH++CRRV+YPTL YTA+GGKI+SE+GVG
Sbjct: 420 QLIDFVDQKYFLKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVG 479

Query: 120 TLLSVTASLQQCIRQFRRLQFVKGDKDPEPLPCNPMLYSSQAHTNAQMNKFLETMADWYR 179
           TLLSVTASL+QCI+QFR+L F+KGD+DP+P PC  M +S+Q+HTNAQMNK L TM +WYR
Sbjct: 480 TLLSVTASLKQCIKQFRKLNFLKGDRDPDPQPCFRMFHSTQSHTNAQMNKLLSTMVEWYR 539

Query: 180 YADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVYKIASRDLSRPLRESSNNSAPEYS 239
           YADNRKK+V FC+Y+IR SLAKLYAA+Y+L+SRAKVYKI+SR+LSRPL++    S+PEY 
Sbjct: 540 YADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKISSRNLSRPLKD-KKGSSPEYH 598

Query: 240 DLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWIPDHERVLHEYIRLQDPKFFCELWRS 299
           +LLRMGLV++I+G+Q++ MSL+P  DYTPFP NW P+HE+ L EYI+L DPK   E    
Sbjct: 599 NLLRMGLVESIDGLQYTRMSLVPETDYTPFPSNWRPNHEKALFEYIKLDDPKTLEEQRYC 658

Query: 300 IKHQSLTLPQDEISEIVWDYKTLGIRRYQSSGEKEPNNASEK 341
           I+ Q L  PQD IS +VW+YK   I   Q +  +  +N  E+
Sbjct: 659 IREQGLFSPQDYISMLVWNYKRNAIAIDQITLVQSGDNNKER 700