Jatropha Genome Database

JcCA0297911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.10 - phase: 0 
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002025 60S ribosomal protein L18a, putative                    104   7e-24
29759.m000283 60S ribosomal protein L18a, plant, putative              68   1e-12

>29693.m002025 60S ribosomal protein L18a, putative
          Length = 303

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 8/100 (8%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M++EGKNRGV  TGNPQ +YYGTFQGVANYY                     + PHGS  
Sbjct: 1   MSDEGKNRGV--TGNPQGEYYGTFQGVANYYPSVPPPSLHPIVGFPQP----VPPHGSNP 54

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           NP Y+ H  N+  TGYAVIE RP+ EHRLPCCGLGMGWFL
Sbjct: 55  NPYYYVH--NTIPTGYAVIEARPLIEHRLPCCGLGMGWFL 92


>29759.m000283 60S ribosomal protein L18a, plant, putative
          Length = 166

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 8/80 (10%)

Query: 21  YGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIANPQYFPHGYNSFATGYAVIE 80
           YGTFQGVANY                      + P G+ + P  +PHGY +   GYAV E
Sbjct: 38  YGTFQGVANY------PPPHPPQHPVIGFPQPVPPPGA-SEPPAYPHGYQT-VPGYAVAE 89

Query: 81  GRPVREHRLPCCGLGMGWFL 100
           GRPVRE RLPCCG+G+GWFL
Sbjct: 90  GRPVRERRLPCCGIGVGWFL 109