Jatropha Genome Database

JcCA0297821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297821.20 - phase: 0 /partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006397 transcription factor, putative                          138   7e-34

>30169.m006397 transcription factor, putative
          Length = 416

 Score =  138 bits (347), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 73/81 (90%), Gaps = 5/81 (6%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQ-----VDLDNMDEKEFPKVHDLEFLDCIL 55
           VVGKKYIRLY ASLS+EL+PYSETML NSSQ     VDLDN+DE ++PKVHDLEF+DCIL
Sbjct: 319 VVGKKYIRLYDASLSDELHPYSETMLCNSSQNFFLKVDLDNIDESKYPKVHDLEFMDCIL 378

Query: 56  EEGEMLYIPPKWWHYVRSLTT 76
           EEGEMLYIPPKWWHYVRSLTT
Sbjct: 379 EEGEMLYIPPKWWHYVRSLTT 399