Jatropha Genome Database

JcCA0297121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297121.10 - phase: 0 /partial
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28966.m000548 conserved hypothetical protein                          204   1e-53
27553.m000315 Protein AFR, putative                                    86   1e-17
29841.m002737 conserved hypothetical protein                           69   1e-12
29703.m001500 Protein AFR, putative                                    60   7e-10
30174.m009020 Protein AFR, putative                                    57   6e-09
29835.m000632 Protein AFR, putative                                    56   7e-09
28320.m001108 Protein AFR, putative                                    56   8e-09
29693.m001994 Protein AFR, putative                                    52   2e-07
30148.m001439 Protein AFR, putative                                    48   2e-06
29929.m004667 Protein AFR, putative                                    46   7e-06
30020.m000213 conserved hypothetical protein                           46   1e-05

>28966.m000548 conserved hypothetical protein
          Length = 446

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 120/162 (74%), Gaps = 5/162 (3%)

Query: 19  LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQP 78
           LIPGLPDEIAMECLVKVP QFH NMKSVCH+WQ+LIS+PSFYQ R KSG SE L+CLVQP
Sbjct: 22  LIPGLPDEIAMECLVKVPYQFHCNMKSVCHTWQDLISDPSFYQQRRKSGTSEHLVCLVQP 81

Query: 79  LPSLDSIQSLTTTIAIAK-----KEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKTE 133
           LP      +L  T  +A      K++  +        IHSPPQF ++IYN  +N WQ+T 
Sbjct: 82  LPQQQHDSALDVTPDMADPTTVTKKEDKQEQEQQQQQIHSPPQFAISIYNLNFNIWQRTR 141

Query: 134 FPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
             G IPMFCQCLAIPS+ K+L+LG WDS+TLEPVPDV+ILDL
Sbjct: 142 PQGGIPMFCQCLAIPSSGKILLLGGWDSNTLEPVPDVHILDL 183


>27553.m000315 Protein AFR, putative
          Length = 337

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 30/162 (18%)

Query: 18  QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
           +LIP LP+EIA++CL ++    H     VC +W +L+ +  FY  R +S  + +  CL+Q
Sbjct: 3   ELIPDLPEEIALDCLTRLHYTTHPVASRVCKNWNHLLQSKHFYYHRKQSSQTHKAACLIQ 62

Query: 78  PLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT----E 133
            LP++ + + +                         PP++G+ + +     W++     E
Sbjct: 63  LLPAISASKPVC------------------------PPRYGVTLCDPINGIWERFEPVPE 98

Query: 134 FPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
           +P  +P+FCQ  +  S  KLL++G WD  + EPV  V++ D 
Sbjct: 99  YPDGLPLFCQVTS--SEGKLLVIGGWDPVSYEPVSYVFVYDF 138


>29841.m002737 conserved hypothetical protein
          Length = 355

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 26/162 (16%)

Query: 18  QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
           +LIPGLPD++A +CLV+V  +  S + +VC  W+  +  P FYQ R  S NS++LI + Q
Sbjct: 2   ELIPGLPDDVARDCLVRVMYKQFSTVIAVCKGWRTELELPEFYQRRKDSCNSQKLIVMAQ 61

Query: 78  PLPSLDSIQSLTTTIAIAKKEDKLEHXXXXXXXIHSPPQFGLNIYNATYNTWQKT----E 133
                    +L                        + P + L +       W        
Sbjct: 62  ARVHQKQGSNLIK--------------------YRANPVYSLTVLEPDTGDWCDLPPIPG 101

Query: 134 FPGKIPMFCQCLAIPSANKLLILGVWDSDTLEPVPDVYILDL 175
           F   +PMFCQ +++ S   L++LG  D  T E    V+I + 
Sbjct: 102 FSHGLPMFCQVVSVGS--DLIVLGGLDPTTWEASDSVFIFNF 141


>29703.m001500 Protein AFR, putative
          Length = 345

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 39/58 (67%)

Query: 18 QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICL 75
          +LI GLPD IA+ C+ +VP   H  ++ V HSW++ I +P  ++ R + G++E L+C+
Sbjct: 3  ELIEGLPDAIAIRCIARVPFYLHPKLELVSHSWRSAIRSPELFKARQEVGSAEDLLCV 60


>30174.m009020 Protein AFR, putative
          Length = 353

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 8  IKNYMGVENQ-QLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKS 66
           KN+   E Q QLI GLPD+I + CL +VP ++H+ +K VC  W++L+ +  +   R+K 
Sbjct: 3  FKNHSIEEGQAQLIRGLPDDIVLFCLARVPRKYHTVLKCVCRRWRDLVCSEEWRAYRMKH 62

Query: 67 GNSEQLI 73
            SE  I
Sbjct: 63 NLSETWI 69


>29835.m000632 Protein AFR, putative
          Length = 437

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 19  LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
           L+PGLPD++A+ CL++VP   H  ++ VC  W  L++   FY LR   G +E+ + +++
Sbjct: 77  LLPGLPDDLAIACLIRVPRAEHRKLRLVCKRWYRLLAGNFFYSLRKSLGMAEEWVYVIK 135


>28320.m001108 Protein AFR, putative
          Length = 436

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 19  LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLICLVQ 77
           L+PGLPD++A+ CL++VP   H  ++ VC  W  L++   FY LR   G +E+ I +++
Sbjct: 75  LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLAGNFFYSLRKSLGIAEEWIYIIK 133


>29693.m001994 Protein AFR, putative
          Length = 465

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 13  GVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLK 65
            ++ +  IPGLPD++A+ CL+++P Q H++ ++VC  W  L+ N   +  R K
Sbjct: 106 ALQGEPFIPGLPDDVALNCLLRLPVQSHASCRAVCKRWHLLLGNKERFFTRRK 158


>30148.m001439 Protein AFR, putative
          Length = 378

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 5  KNSIKNYMGVENQQLIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQ 61
          K S+K     E+  L+PGLP+++A+ CL  VPC     + SVC +W+ L+ +  F Q
Sbjct: 9  KESMKQSSTTEDDTLLPGLPNDLAILCLASVPCTL---LLSVCRAWRRLLYSSCFRQ 62


>29929.m004667 Protein AFR, putative
          Length = 391

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 19  LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSFYQLRLKSGNSEQLI 73
           ++PGLPD++A  CL  VP  +  +M +VC  W++ + +  F  +R  +G  E+L+
Sbjct: 55  ILPGLPDDVAKYCLALVPRPYFPSMGAVCKKWRSFMKSKEFLVVRKLAGLLEELL 109


>30020.m000213 conserved hypothetical protein
          Length = 399

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 19 LIPGLPDEIAMECLVKVPCQFHSNMKSVCHSWQNLISNPSF 59
          LIPGLPD +A  CL  VP    S + SVCHSW+ LI +P+F
Sbjct: 30 LIPGLPDHVAQLCLSLVP---PSLLYSVCHSWRRLIYSPAF 67