Jatropha Genome Database

JcCA0296911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.20 - phase: 2 /partial
         (343 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28838.m000255 conserved hypothetical protein                          500   e-142
29813.m001483 conserved hypothetical protein                          171   5e-43
28129.m000050 60S ribosomal protein L34, putative                     166   1e-41
30169.m006257 conserved hypothetical protein                          124   7e-29
29974.m000234 conserved hypothetical protein                           80   2e-15

>28838.m000255 conserved hypothetical protein
          Length = 508

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/317 (76%), Positives = 271/317 (85%), Gaps = 9/317 (2%)

Query: 28  QDFDAFYNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFES-IEDEDFSVSPYMSWD 86
           +D DAFY+KY ERMRWFDVLNY+RTCGI T        P+S ES IE  D SVSPY SW 
Sbjct: 200 KDLDAFYDKYTERMRWFDVLNYDRTCGIRT--------PSSIESNIEGVDLSVSPYTSWG 251

Query: 87  KRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAEELQK 146
           K ARK+LLRSIESDFELVYVAQ+CLSWEAL+HQYRKVEALA +TSQNG+F  +VA + QK
Sbjct: 252 KTARKKLLRSIESDFELVYVAQACLSWEALYHQYRKVEALASSTSQNGVFYDNVAGDFQK 311

Query: 147 FKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEGINVKEVL 206
           F++LLERFMEDER EGKR+WNYVRGRFS +SLLQVP+VSGFFEQ  E MKIE +N+KEVL
Sbjct: 312 FQILLERFMEDERCEGKRLWNYVRGRFSHRSLLQVPQVSGFFEQEMENMKIEALNIKEVL 371

Query: 207 KAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLKD 266
           K+IERCI  FWVFV+ D KK WWK RS LWT PPVEDPRDLKLL D+TR LQKKELWLKD
Sbjct: 372 KSIERCIEAFWVFVRTDEKKPWWKLRSFLWTCPPVEDPRDLKLLTDVTRQLQKKELWLKD 431

Query: 267 SQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEF 326
           SQGKQRCWFRKVV P+EESQRK ++FTMIDIKLVSRVLQL V+SS+Q+KWCQEKL NI F
Sbjct: 432 SQGKQRCWFRKVVNPVEESQRKVMMFTMIDIKLVSRVLQLPVLSSSQIKWCQEKLGNIGF 491

Query: 327 KEGKIVRACSSGPLFPP 343
           +EGKIVRAC+ GPLFPP
Sbjct: 492 EEGKIVRACNCGPLFPP 508


>29813.m001483 conserved hypothetical protein
          Length = 791

 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 19/323 (5%)

Query: 34  YNKYAERMRWFDVLNYERTCGISTILNK-----QIGTPNSFESIEDEDFSVSPYMSWDKR 88
           Y  Y ++MR  D+LN++    +  +  K     Q    +S  ++     S+     W  +
Sbjct: 473 YKSYLDKMRKLDILNFQTMHALGLLQMKDTVQLQTARKSSLLAMT----SLLSQNLWLCK 528

Query: 89  AR------KRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNGIFSHHVAE 142
                   K+++  + SDFE +YV Q CLSWE LH QY KV+ L    SQ     + VA 
Sbjct: 529 GSAVVDPLKKVIADMNSDFETIYVGQLCLSWEMLHWQYWKVQELQKYDSQGSHHYNQVAG 588

Query: 143 ELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEG--- 199
           E Q F+VL++RF+E+E F+G RV NYV+ R   +SLLQVP V     + K +   EG   
Sbjct: 589 EFQLFQVLIQRFIENEPFQGPRVQNYVKNRCVLRSLLQVPLVKDDCIKDKGKRGDEGQHA 648

Query: 200 INVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQK 259
           I    +   IE  + VFW F++ D  +S   F+ +L  +P ++D  DL+L  D+  + QK
Sbjct: 649 ITSPTLRGIIELSMQVFWEFLRADKDESNVTFQGNLQAHPNLQDLVDLELFTDVRTDYQK 708

Query: 260 KELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQE 319
           K+  LKD      C  ++  K  E    + LL   +++KL+SRVL ++ +++ QL WC E
Sbjct: 709 KDRKLKDISRSGNCIVKRFKKQQENGMHQTLLIAQVEMKLISRVLNMAKVTTDQLIWCHE 768

Query: 320 KLDNIEFKEGKIVRACSSGPLFP 342
           KLD I     K+    SS  LFP
Sbjct: 769 KLDKINISNRKVF-VESSFLLFP 790


>28129.m000050 60S ribosomal protein L34, putative
          Length = 764

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 175/329 (53%), Gaps = 23/329 (6%)

Query: 33  FYNKYAERMRWFDVLNYERTCGISTILNK---------QIGTPNSFESIEDEDFSVSPYM 83
           FY  Y ERMR FD+LNY++   +  + +K         ++ TP +  S+  + F +    
Sbjct: 439 FYKSYRERMRKFDILNYQKMYALGFLQSKDPLKSLSSNKVSTP-ALTSLLSQKFLLGKRK 497

Query: 84  SWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAI-TTSQNGIFSHH-VA 141
                     ++ + SD E++YV Q CLSWE LH QY K  AL I  +   GI  ++ VA
Sbjct: 498 KSSSDPMMSFIKELHSDLEMIYVGQMCLSWEILHWQYEK--ALEIWDSDPYGIRCYNEVA 555

Query: 142 EELQKFKVLLERFMEDERFEGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKI---- 197
            E Q+F+VL++RF+E+E FEG RV NYV+ R   +SLLQVP +     + K   +I    
Sbjct: 556 GEFQQFQVLMQRFIENEPFEGPRVQNYVKNRCVLRSLLQVPVIREDSIKDKRARRIAAKD 615

Query: 198 --EGINVKEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTR 255
               I   ++++ +E  I +FW FV+ D        +S   T    +DP +L+LL ++  
Sbjct: 616 DDNAITSDKLVEIMEESIRIFWRFVRADKDAHTVIQKSRRGTQIEPQDPTELELLTEVRT 675

Query: 256 NLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLL--FTMIDIKLVSRVLQLSVISSTQ 313
           +LQKKE  LK+      C  +K  K  EES    +L  F+ +D+KLVSRVL +S I++ Q
Sbjct: 676 SLQKKEKKLKEKLRSGNCILKKFQKNQEESSSDQVLYFFSQVDMKLVSRVLNMSKITTDQ 735

Query: 314 LKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           L WC  KLD I F   KI     S  LFP
Sbjct: 736 LIWCSNKLDKINFVSRKI-HVEPSFLLFP 763


>30169.m006257 conserved hypothetical protein
          Length = 434

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 168/330 (50%), Gaps = 37/330 (11%)

Query: 30  FDAFYNKYAERMRWFDVLNYER--TCGISTIL-------NKQIGTP------NSFESIED 74
           FDA Y+KY ERM +FD +  ++    G  T L       +K++ +P         E  ED
Sbjct: 124 FDAVYDKYCERMLFFDRMMVQQLNENGCPTPLTPSPKSASKKLTSPFRCLSLKRIEEPED 183

Query: 75  EDFSVSPYMSWDKRARKRLLRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQNG 134
           E       M   ++++    +    D E  YVAQ CL+WEALH QY ++    +   ++ 
Sbjct: 184 E-------MEHLQQSQNDPYQ----DLEKAYVAQVCLTWEALHCQYTQLSQKILCQPESS 232

Query: 135 IFSHHVAEELQKFKVLLERFMEDERF-EGKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKE 193
              +H A+  Q+F+VLL+RF+E+E F EG R   Y R R     LLQ P   G  ++   
Sbjct: 233 TCYNHSAQHFQQFQVLLQRFIENEPFQEGLRAEIYARARNLLPRLLQAPNGKGSDQKQMG 292

Query: 194 EMKIEGINV-KEVLKAIERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVD 252
           E++ + + +  + +K +E  IL F +F+K D KK      +       +  P  L     
Sbjct: 293 ELESDLVVLAPDFIKIMESVILTFHLFLKTDKKKPSGVL-NLFGNQNQIATPLQL----- 346

Query: 253 LTRNLQKKELWLKDSQGKQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISST 312
           +  +L+KK + LK+   K + W +K    + E    ++LF +ID+K+++RVL++  IS  
Sbjct: 347 IQSSLEKKRMKLKELCKKSKGWKKKSWPQMYED--VEVLFGVIDVKILTRVLRMVRISKE 404

Query: 313 QLKWCQEKLDNIEFKEGKIVRACSSGPLFP 342
           QL WC+EK+  ++  +GK+ R   S  LFP
Sbjct: 405 QLMWCEEKMKKLDLSDGKLQRD-PSPILFP 433


>29974.m000234 conserved hypothetical protein
          Length = 600

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 161/314 (51%), Gaps = 21/314 (6%)

Query: 34  YNKYAERMRWFDVLNYERTCGISTILNKQIGTPNSFESIEDEDFSVSPYMSWDKRARKRL 93
           + KY E M + D ++ ++     ++ + Q+  P S       D  V    + +K+    +
Sbjct: 302 FQKYDEEMMFLDRISAQKLHETESLKSIQV-NPRSIS-----DRIVHKITTLNKKPTD-I 354

Query: 94  LRSIESDFELVYVAQSCLSWEALHHQYRKVEALAITTSQN---GIFSHHVAEELQKFKVL 150
            ++   + E  YVAQ C +WEAL+  Y+  +    +  +N   G  +H +A++ Q+F+VL
Sbjct: 355 RQNPYHELEATYVAQICWTWEALNWNYKNFQRKRASQQRNFDPGCPAH-IAQQFQQFQVL 413

Query: 151 LERFMEDERFE-GKRVWNYVRGRFSFKSLLQVPKVSGFFEQAKEEMKIEGINVKEVLKAI 209
           L+R++E+E +E G+R   Y R R     LL VP+     +   EE     I+    L  +
Sbjct: 414 LQRYVENEPYEQGRRPEVYARMRLLAPKLLLVPEYRE--DDPNEEGFGSKISSAAFLMIM 471

Query: 210 ERCILVFWVFVKIDNKKSWWKFRSSLWTYPPVEDPRDLKLLVDLTRNLQKKELWLKDSQG 269
           E  I  F  F+K D +K   +  SS +    +    D  LL  + +  +KK++ LKD + 
Sbjct: 472 EEGIQTFMNFLKADKQKPC-QILSSFFRRN-MRGSVDPALLQLMKKVNKKKKMKLKDMRR 529

Query: 270 KQRCWFRKVVKPLEESQRKDLLFTMIDIKLVSRVLQLSVISSTQLKWCQEKLDNIEFKEG 329
            ++C  ++ +K  EE +   +L  +ID+K+VSRVL++S +S  Q+ WC+ K+  +   +G
Sbjct: 530 VRKCIRKRKLKVEEEME---ILMGLIDLKVVSRVLRMSDLSEEQMHWCEGKMSKVRISDG 586

Query: 330 KIVRACSSGPLFPP 343
           K+ R   S P+F P
Sbjct: 587 KLQR--DSSPIFFP 598