Jatropha Genome Database

JcCA0296911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296911.10 - phase: 0 /partial
         (296 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28838.m000254 starch synthase, putative                               325   2e-89

>28838.m000254 starch synthase, putative
          Length = 754

 Score =  325 bits (833), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 193/305 (63%), Positives = 223/305 (73%), Gaps = 13/305 (4%)

Query: 1   MASIGSLPSILETKRESFILLHGRSQQRP-RFPFLWYRPQRAFSFAVSNGGFSLRFKPVR 59
           MAS+GSLP I+E K ES IL HG+SQQR  +FP   YRP  ++SFA+SN GF LR K VR
Sbjct: 1   MASLGSLPFIVEPKTESSILFHGKSQQRSSKFPSFAYRPNISYSFAISNDGFPLRLKSVR 60

Query: 60  ATAKEGVNDDGSDDPLQATIEKSKKVLALQRDLLQQISERRKLVXXXXXXXFDQEIDRTS 119
           AT K+GVN DGS+D +Q TIEKSKKVLA+Q+DLLQQI+ERRKLV        DQE+D TS
Sbjct: 61  ATGKDGVNSDGSEDAIQTTIEKSKKVLAMQKDLLQQIAERRKLVSDIKSSIIDQELDSTS 120

Query: 120 YDQRESSL-QPDNASTSRKNILEQQNGNGGIVPSSYVDSTADELPETASSAVSRSYFKGE 178
           YDQ ESSL  P+N STS  NILEQQ G+  I PSSYV S AD  PE  SSA S  +   E
Sbjct: 121 YDQTESSLPNPNNGSTS-VNILEQQIGS--ISPSSYVSSAADVRPENTSSAFSEGHSIDE 177

Query: 179 EEFEQPKSPKTDSSVKNSTKQPKDASSEK-------SFLTNTLEVSVINDEKTEGSNESA 231
            + +Q +SPKT SS+KNST+Q    SSEK       +FL+N  E S++ND  TE S ES 
Sbjct: 178 RDPKQHESPKTVSSIKNSTRQLNQVSSEKAWSDELPTFLSNR-ETSMLNDGMTESSTEST 236

Query: 232 SPEVNNVGSDSMTEHAKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGSLPKALARRG 291
             +V+NV +  MTE  K PPLAGANVMNVILV+AECAPWSKTGGLGDVAGSLPKALARRG
Sbjct: 237 LHKVDNVENIPMTEDTKSPPLAGANVMNVILVSAECAPWSKTGGLGDVAGSLPKALARRG 296

Query: 292 HRVMV 296
           HRVMV
Sbjct: 297 HRVMV 301