Jatropha Genome Database

JcCA0296871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296871.10 + phase: 0 /partial
         (255 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003531 homeobox protein knotted-1, putative                    275   1e-74
29631.m001056 homeobox protein knotted-1, putative                    108   3e-24
30147.m013923 homeobox protein knotted-1, putative                    104   4e-23
30128.m008910 homeobox protein knotted-1, putative                     92   2e-19
30170.m013647 homeobox protein knotted-1, putative                     71   6e-13
29848.m004577 homeobox protein knotted-1, putative                     57   6e-09
29737.m001270 homeobox protein knotted-1, putative                     50   7e-07

>29842.m003531 homeobox protein knotted-1, putative
          Length = 353

 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 158/214 (73%), Gaps = 9/214 (4%)

Query: 1   MEGGSNSTSCMMAFGDNSNGLCPMMMMPLMTSXXXXXXXXXXXXXXNADSSSNTXXXXXX 60
           MEGGSNSTSCMMAFGDNSNGLCPMMMM  + +              NAD SSNT      
Sbjct: 1   MEGGSNSTSCMMAFGDNSNGLCPMMMMMPLMTSSHQHHHHHHHP--NADLSSNTLFLPLP 58

Query: 61  XXTNHQDQNRNSSSASSMILDDHXXXXXXXXXXXXSCYFMDSNDGSAASVKAKIMAHPHY 120
             TN+QDQNRNSSS SSMILDDH             CYFMD+ND +AASVKAKIMAHPHY
Sbjct: 59  P-TNNQDQNRNSSSGSSMILDDHNPNTNT------GCYFMDNNDAAAASVKAKIMAHPHY 111

Query: 121 HRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVGEDPALDQFMEAYCEMLTK 180
           HRLLAAYINCQKVGAPPEVV            MG  GTSC+GEDPALDQFMEAYCEMLTK
Sbjct: 112 HRLLAAYINCQKVGAPPEVVTRLEEACASAATMGQAGTSCIGEDPALDQFMEAYCEMLTK 171

Query: 181 YEQELSKPFKEAMLFLQRVECQFKALTVSSPNSG 214
           YEQELSKPFKEAMLFLQRVECQFKALTV+SPNS 
Sbjct: 172 YEQELSKPFKEAMLFLQRVECQFKALTVASPNSA 205


>29631.m001056 homeobox protein knotted-1, putative
          Length = 337

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 103 NDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXM---GPTGTS 159
            D  +  +KAKI +HP Y RLL AYI+CQKVGAPPE+                 G   ++
Sbjct: 89  EDSMSTLIKAKIASHPSYPRLLHAYIDCQKVGAPPEIAGLLDEIRRENDMYKGDGGAAST 148

Query: 160 CVGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           CVG DP LD+FME YC++L KY+ +L KPF EA  FL ++E Q + L
Sbjct: 149 CVGADPELDEFMETYCDVLLKYKSDLEKPFDEATTFLNKIEMQLRNL 195


>30147.m013923 homeobox protein knotted-1, putative
          Length = 328

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 109 SVKAKIMAHPHYHRLLAAYINCQKVGAPPEV--VXXXXXXXXXXXXMGPTGTSCVGEDPA 166
           +++AKI AHP Y +LL AYI+CQKVGAPPE+  +               T TSC+G DP 
Sbjct: 86  AIRAKIAAHPLYPKLLQAYIDCQKVGAPPEMAYMLDEIRQESDLSKRPSTITSCLGADPE 145

Query: 167 LDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           LD+FME YC++L KY+ +LS+PF EA  FL  +E Q   L
Sbjct: 146 LDEFMETYCDILVKYKSDLSRPFNEATTFLNDIEAQLNTL 185


>30128.m008910 homeobox protein knotted-1, putative
          Length = 327

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 58/100 (58%), Gaps = 7/100 (7%)

Query: 110 VKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPTGTSCVGE---DPA 166
           +K +I  HP Y  L++AYI CQKVGAPPE+             +      C GE   DP 
Sbjct: 68  IKTQIAHHPRYPDLVSAYIECQKVGAPPEMTSLLEEIGRENYSI----KGCSGEMGADPE 123

Query: 167 LDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKAL 206
           LD+FME+YCE+L +Y++ELSKPF EA  F   +E Q   L
Sbjct: 124 LDEFMESYCEVLHRYKEELSKPFDEATTFFSDIESQLSNL 163


>30170.m013647 homeobox protein knotted-1, putative
          Length = 259

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 132 KVGAPPEVVXXXXXXXXXXXXMGPTGTSCVG--EDPALDQFMEAYCEMLTKYEQELSKPF 189
           +VGAPPEVV               +  +     +DP LDQFMEAYC+ML KY +EL++P 
Sbjct: 21  RVGAPPEVVARLVAARQEFESKQRSSVNSRDNLKDPELDQFMEAYCDMLMKYREELTRPI 80

Query: 190 KEAMLFLQRVECQF 203
           +EAM F++R+E Q 
Sbjct: 81  QEAMDFMRRIETQL 94


>29848.m004577 homeobox protein knotted-1, putative
          Length = 456

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 108 ASVKAKIMAHPHYHRLLAAYINCQKVGAP----PEVVXXXXXXXXXXXXMGPTGTSCVGE 163
           A  KA+I++HP Y +LL+A++ C ++  P    P +                 G   V +
Sbjct: 164 ARYKAEILSHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGQGLVAD 223

Query: 164 DPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQRVECQFKALTVSSPNSG 214
           D  LDQFM  Y  +L  ++++L +  +    EA++    +E   ++LT  SP  G
Sbjct: 224 DKELDQFMTHYFLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEG 278


>29737.m001270 homeobox protein knotted-1, putative
          Length = 374

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 101 DSNDGSAASVKAKIMAHPHYHRLLAAYINCQKVGAPPEVVXXXXXXXXXXXXMGPT---- 156
           D+N+   A  KA+I+ HP Y +LLAA++ C ++  P + +            +       
Sbjct: 68  DNNNWERAKSKAEILGHPLYEQLLAAHVACLRIATPVDQLARIDTQLAQSQEVVAKYSVL 127

Query: 157 GTSCVGEDPALDQFMEAYCEMLTKYEQELSKPFK----EAMLFLQRVECQFKALTVSSPN 212
           G   V ++  LDQFM  Y  +L  ++ +L +  +    EA++    +E   ++LT +S  
Sbjct: 128 GNGQVIDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWELEQSLQSLTGASLG 187

Query: 213 SG 214
            G
Sbjct: 188 EG 189