Jatropha Genome Database

JcCA0296711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296711.20 + phase: 0 /pseudo/partial
         (313 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001313 WD-repeat protein, putative                             531   e-151

>29681.m001313 WD-repeat protein, putative
          Length = 422

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 245/293 (83%), Positives = 270/293 (92%)

Query: 4   GEQQEAMEVATETTQSIEQDYSWPLIRFDLPPRRIHHFYKQFRTSSNANNFLKGVKWSPD 63
           GE+Q ++EVA ETT+S+EQD SWP+IRFDLPP+R HHFYKQFR+S   NNFLKG+KWSPD
Sbjct: 2   GEEQPSIEVAAETTESVEQDNSWPVIRFDLPPQRTHHFYKQFRSSPIPNNFLKGIKWSPD 61

Query: 64  GSCFLTSTEDNTLRLFSLPDDGSGSDSNACSINVDEDSYDASLVVNEGESVYDFCWYPYM 123
           GSCFLTS+ED TLR+FSLPD  S  DS ACS++ D+DSYD+S+VV EGESVYDFCWYPYM
Sbjct: 62  GSCFLTSSEDKTLRVFSLPDYCSSDDSIACSLDTDQDSYDSSIVVKEGESVYDFCWYPYM 121

Query: 124 TASEPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIAFNPAGTKIFAG 183
           TAS+PVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSI+FNPAG K+FAG
Sbjct: 122 TASDPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSISFNPAGNKMFAG 181

Query: 184 YNKSVRVFDIHRPGRDFEQYSTLQGNKEGQTGIISAIAVSPTRSGMLATGSYSQTAAIFR 243
           YNKS+RVFDIHRPGR FEQ+STLQGNKEGQTGIIS+IA  PT SGMLATGSYS T AIFR
Sbjct: 182 YNKSIRVFDIHRPGRVFEQHSTLQGNKEGQTGIISSIAFCPTHSGMLATGSYSHTTAIFR 241

Query: 244 EDNMELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDLRKTVEVVYK 296
           EDNMELLYVLHGQEGGITH+QFS+DGNYLYTGGRKDPYILCWD+RKT EVVYK
Sbjct: 242 EDNMELLYVLHGQEGGITHIQFSRDGNYLYTGGRKDPYILCWDMRKTAEVVYK 294