Jatropha Genome Database

JcCA0296141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.10 - phase: 1 /pseudo/partial
         (92 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30063.m001418 conserved hypothetical protein                          117   8e-28

>30063.m001418 conserved hypothetical protein
          Length = 303

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 64/84 (76%)

Query: 9   PESMGCASDHMXXXXXXXXXXFVWSCKALVSEIKASHKEMERMLQEQRXTSFQGRLLKHN 68
           P+     SD M          FVWS KALVSEIKASHKE+E MLQEQR TSFQGRLLKHN
Sbjct: 220 PKVWVVTSDRMQQHAAHGAGAFVWSSKALVSEIKASHKEVEMMLQEQRPTSFQGRLLKHN 279

Query: 69  LDSEVVDALKDLRNKLAENESKSR 92
           LDSEVVDALKDLRNKLAENESK R
Sbjct: 280 LDSEVVDALKDLRNKLAENESKRR 303