Jatropha Genome Database

JcCA0294381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294381.10 + phase: 0 /partial
         (109 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001444 transcription factor, putative                          117   8e-28

>29830.m001444 transcription factor, putative
          Length = 223

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 60/66 (90%)

Query: 44  RNPKLKSIPTLANDLQLIFKLSSRTADGESLQFLSKGKCERARGDCCQSKKSLPVLDQDL 103
           RNPKLKSIPTLANDLQLIFKLS RTAD ESLQF  +GKC+R RGDC QSK+SLPVLDQDL
Sbjct: 3   RNPKLKSIPTLANDLQLIFKLSCRTADEESLQFFFQGKCKRDRGDCYQSKRSLPVLDQDL 62

Query: 104 NCLPYS 109
           NCLPYS
Sbjct: 63  NCLPYS 68