Jatropha Genome Database

JcCA0294231.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294231.20 - phase: 1 /partial
         (259 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28153.m000287 isoamylase, putative                                    414   e-116
29908.m006089 isoamylase, putative                                    123   8e-29
29776.m000488 isoamylase, putative                                    114   7e-26

>28153.m000287 isoamylase, putative
          Length = 872

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/266 (77%), Positives = 219/266 (82%), Gaps = 13/266 (4%)

Query: 1   LVTLQRRLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSSDELASELCWNCGEEG 60
           L  L  RLCGSGDIFS+G R   F FN+IARNSGLPLVDLVSFS  EL SEL WNCGEEG
Sbjct: 603 LGDLATRLCGSGDIFSNG-RGPAFSFNYIARNSGLPLVDLVSFSGGELGSELSWNCGEEG 661

Query: 61  PTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGSISYGDRKPFDWNSLST 120
           PTNK  VLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSS GSISYGDRKPFDWN+LST
Sbjct: 662 PTNKTAVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSRGSISYGDRKPFDWNALST 721

Query: 121 GFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDPSCKFLAMTLR 180
            FG QMTQFISFLSSLR R SD+LQKRNFLKEENIDW+G DQSPPRWEDP+CKFLAMTL+
Sbjct: 722 SFGNQMTQFISFLSSLRMRRSDLLQKRNFLKEENIDWHGNDQSPPRWEDPTCKFLAMTLK 781

Query: 181 TKSS------------GNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSND 228
              +            G+LFMAFNAA  +ESVILP +PEGM W RLVDTALPFPGFFS D
Sbjct: 782 IDKAESQLSSEPSNIKGDLFMAFNAAGHAESVILPPVPEGMIWRRLVDTALPFPGFFSED 841

Query: 229 GEPVVEQMAELIVYGMKSHSCILFEA 254
           GEPVVEQ+A LI Y M SHSC LFEA
Sbjct: 842 GEPVVEQIAGLIAYKMNSHSCTLFEA 867


>29908.m006089 isoamylase, putative
          Length = 783

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 27/266 (10%)

Query: 7   RLCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFS-----------SDELASELCWN 55
           R+ GS D++    R      NF+  + G  L DLVS++           +D       WN
Sbjct: 530 RVAGSADLYRVNKRKPFHSVNFVIAHDGFTLHDLVSYNFKHNDANGEGGNDGSNDNFSWN 589

Query: 56  CGEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSS-GGSISYGDRKP-- 112
           CG EG T+   +   R +Q++N+   L +S G P++ MGDE G +  G + SYG      
Sbjct: 590 CGFEGETDDPNIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTSIN 649

Query: 113 -FDWNSLSTGFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRWEDPS 171
            F W  L+        QF S +   R R   V +  NFL + ++ W+  +     W++  
Sbjct: 650 NFQWELLAAQRNDHF-QFFSEVIKFR-RTHQVFRHDNFLNQNDVTWHEDN-----WDNYE 702

Query: 172 CKFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFPGFFSNDGEP 231
            KFLA TL   +  ++++AFNA D    V++P  P   +W R+ DT L  P  F  +G P
Sbjct: 703 SKFLAFTLHESNGADIYLAFNAHDYFIKVLIPPPPSKRSWFRVADTNLKSPDDFVPEGVP 762

Query: 232 VVEQMAELIVYGMKSHSCILFEARST 257
            +        Y +  +S IL EA+ T
Sbjct: 763 GIGS-----AYNVAPYSSILLEAKLT 783


>29776.m000488 isoamylase, putative
          Length = 795

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 30/242 (12%)

Query: 8   LCGSGDIFSSGTRSRLFLFNFIARNSGLPLVDLVSFSS-----------DELASELCWNC 56
           LCGS +++  G R      NFI  + G  L DLVS+++           D  +    WNC
Sbjct: 527 LCGSPNLYQEGGRKPWNSINFICAHDGFTLADLVSYNNKNNLANGEDNNDGESHNNSWNC 586

Query: 57  GEEGPTNKIPVLERRLKQIRNYLFILYVSLGVPVLNMGDECGQSSGGS---------ISY 107
           G+EG    I V + R +Q+RN+   L VS GVP++ MGDE G + GG+         I+Y
Sbjct: 587 GQEGEFASILVKKLRKRQMRNFFVCLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDNYINY 646

Query: 108 GDRKPFDWNSLSTGFGIQMTQFISFLSSLRTRWSDVLQKRNFLKEENIDWYGTDQSPPRW 167
                F W+           +F   ++  R    + L   +F   E + W+G     P W
Sbjct: 647 -----FRWDKKEES-SSDFYRFCRLMTKFRHE-CESLGLNDFPTAERLQWHGHSPGMPDW 699

Query: 168 EDPSCKFLAMTLRTKSSGNLFMAFNAADQSESVILPQLPEGMTWLRLVDTALPFP-GFFS 226
            + S +F+A TL     G +++AFNA     ++ LP+ P G  W  LVDT  P P  FFS
Sbjct: 700 SETS-RFVAFTLNDSVKGEIYVAFNANHLPVTIGLPERP-GYRWQPLVDTGKPAPFDFFS 757

Query: 227 ND 228
           +D
Sbjct: 758 SD 759