Jatropha Genome Database

JcCA0293801.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293801.20 + phase: 0 
         (145 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27504.m000629 conserved hypothetical protein                          102   8e-23

>27504.m000629 conserved hypothetical protein
          Length = 303

 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 73/117 (62%), Gaps = 6/117 (5%)

Query: 18  VKELWQ-IHYSRFFSFPRLSSTCAILKPLSSRCIKKNPHGLHGKWVSS-SSMASLHLKND 75
           +KE WQ + YSRF ++P L ST   L P S+ C  K   G  G W+SS S  ASL ++N 
Sbjct: 20  IKEEWQKVSYSRFITYPSLPSTHPSLIPFSNSCRYK---GTRGTWLSSHSPTASLQIRN- 75

Query: 76  YADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECPIRGSRVVFASYRDSLGQ 132
           Y      VL V   G + EEH+++KL+F+WP VSCL   P RGSR +F SY+DSLGQ
Sbjct: 76  YKSISHAVLTVCLHGNILEEHYVSKLHFTWPLVSCLSGYPPRGSRSLFVSYKDSLGQ 132