Jatropha Genome Database

JcCA0293541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293541.20 - phase: 2 /partial
         (75 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006396 conserved hypothetical protein                           96   3e-21

>30169.m006396 conserved hypothetical protein
          Length = 71

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 4  MVVLISFVHSSRTRFQGDAADQKTARATEDLGISYMIKSLGKDASGIIAKDSAREVPTGP 63
          M V +SFV+SSRTR Q   A+  TA  T+DL  S+++KSLGK AS I  +DSAREVPTGP
Sbjct: 1  MAVFLSFVYSSRTRLQIRVAEDHTANVTQDLD-SHLVKSLGKGASAIYVEDSAREVPTGP 59

Query: 64 DPLHHNNNPTRP 75
          DPLHHN NPTRP
Sbjct: 60 DPLHHNRNPTRP 71