Jatropha Genome Database

JcCA0293441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293441.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001111 conserved hypothetical protein                          111   5e-26
29848.m004648 conserved hypothetical protein                           99   4e-22
29680.m001658 conserved hypothetical protein                           86   5e-18

>28320.m001111 conserved hypothetical protein
          Length = 130

 Score =  111 bits (278), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%), Gaps = 1/59 (1%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          MEEITEGVNN+ +  GDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM I
Sbjct: 1  MEEITEGVNNINL-AGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 58


>29848.m004648 conserved hypothetical protein
          Length = 128

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 51/59 (86%), Gaps = 1/59 (1%)

Query: 1  MEEITEGVNNVTITGGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
          ME +TEGVNN+ I     +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGM I
Sbjct: 1  MEAVTEGVNNMNINDAS-NKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 58


>29680.m001658 conserved hypothetical protein
          Length = 153

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query: 19 HKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMGI 59
           KKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGM I
Sbjct: 42 QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAI 82