Jatropha Genome Database

JcCA0290151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0290151.10 - phase: 2 /partial
         (329 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001361 zinc finger protein, putative                           247   5e-66
29780.m001362 nucleic acid binding protein, putative                   55   3e-08

>29780.m001361 zinc finger protein, putative
          Length = 571

 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 196/363 (53%), Gaps = 44/363 (12%)

Query: 1   NTLGTHLYGNNHMSLGLSQVGSQIPPLQDQNHHHPSTNMLRLGGAGAAKFEHIISPPPPN 60
           NT+G+HLYGNNHMSLGLSQVGS I  LQDQNH   S+N+LRLG AGAAKFEHII  PP N
Sbjct: 219 NTIGSHLYGNNHMSLGLSQVGSPISSLQDQNH--SSSNLLRLGSAGAAKFEHII--PPSN 274

Query: 61  S--------STFFMSDSNQTSFPSKPLHGLMQLPDLQXXXXXXXXXXXXXXXXXXXXXXP 112
           S        S FFMSD+NQ SF +KPLHGLMQLPDLQ                      P
Sbjct: 275 STSLPTMPASAFFMSDANQGSFSNKPLHGLMQLPDLQSATNNSSVATNLFNLSFFSNNSP 334

Query: 113 -NRMSGNDNGANSSTGTATXXX--------XXXXXXXXXXXXXXXMDDHVSSTAGIHSLY 163
            NR+S +DNG +S+  T                            M D V S  GI SLY
Sbjct: 335 GNRISNSDNGNSSTAATNLVNSGFLSPNPFNGGNGGQGSTIFANNMGDPVGS--GIPSLY 392

Query: 164 SNSMQQENITPHMSATALLQKAAQMGXXXXXXXXXXXXXXXXXXXXXXXXKADRPPLVST 223
           SNSMQQENITPHMSATALLQKAAQMG                        K+DR PLVS 
Sbjct: 393 SNSMQQENITPHMSATALLQKAAQMG-STTSSNNNSTLLRGLGSSSSTGNKSDRSPLVSA 451

Query: 224 NFGNA----------------EIESQNQLQGLMNSLANXXXXXXXXX-XXXXXXXXXXXX 266
           NFG++                +IES+NQLQGLMNSLAN                      
Sbjct: 452 NFGSSFGNAKIGDHHHQGLGTQIESENQLQGLMNSLANGGSSIFGGGHGQDNGFGGFTSS 511

Query: 267 XISLEQPHNSGNFSNVEDAKLHKLTLDFLXXXXXXXXXXXXXXXITLSSLDTEIKSAQGN 326
            ISLEQPHNS +FSNV++A  +KLTLDFL               I LS+LDTEIKSAQ N
Sbjct: 512 GISLEQPHNSTSFSNVDEA--NKLTLDFL-GVGGMVRNIGGQHGINLSALDTEIKSAQAN 568

Query: 327 KPF 329
           KPF
Sbjct: 569 KPF 571


>29780.m001362 nucleic acid binding protein, putative
          Length = 589

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 149 MDDHVSSTAGIHSLYSNSMQQENITPHMSATALLQKAAQMGXXXXXXXXXXXXXXXXXXX 208
           M DH    +G+ SL+++S+Q++N  PHMSATALLQKAAQMG                   
Sbjct: 387 MGDHHQMNSGVPSLFTSSVQKDNTVPHMSATALLQKAAQMGSTSSTYSASLLRSFGSSSS 446

Query: 209 XXXXXKADRPPLVSTNFGNAEIES-QNQLQGLMNSLA 244
                 A      + NFG    E+ QN L  LMNS A
Sbjct: 447 STGMKSA------AANFGEIFSENDQNNLHDLMNSFA 477