Jatropha Genome Database

JcCA0289691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289691.10 - phase: 0 /pseudo/partial
         (463 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002400 DNA mismatch repair protein muts2, putative             365   e-101

>29851.m002400 DNA mismatch repair protein muts2, putative
          Length = 873

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/256 (72%), Positives = 208/256 (81%), Gaps = 2/256 (0%)

Query: 207 ELLHFMQKLCKSTTRRVPALMAXXXXXXXXXXXXXXSQIEIVVHNFENQLRKASPDQFNS 266
           EL + +Q    +   R+ ALMA              SQIE VVHNFEN LRKASP QFNS
Sbjct: 619 ELYYEIQDEAGNLDSRIMALMAKETQQVQQELKATKSQIETVVHNFENLLRKASPLQFNS 678

Query: 267 LIRKSESAIASIVEAHCPAESLPANEADSSSYTPQLGEEVHVKGLGDKVVTVVEALGNDE 326
           LIRKSESAIASIVEAH PA++LPA+E D SSYTPQLGE+VH+KG G+KV TVVEA G DE
Sbjct: 679 LIRKSESAIASIVEAHYPADNLPASE-DVSSYTPQLGEQVHLKGFGNKVATVVEAPGKDE 737

Query: 327 TILVQYGKIRVCVKKSDIRSIQANKRRDSTHLVPRLRKQGQQSHSEVNKNEEVSYGPRVQ 386
           TILVQYGKIRV VKKSDIR+IQ  KR ++T LVPRL++QGQQSH+EVNK+E+ SYGPRVQ
Sbjct: 738 TILVQYGKIRVRVKKSDIRAIQGKKRTEATKLVPRLKRQGQQSHAEVNKDED-SYGPRVQ 796

Query: 387 TSKNTVDLRGMRVEEAAIYLDMALSESKPKSVIFVVHGMGTGAVKQRALEILGKHPCVAK 446
           TSKNTVDLRGMRVEEA ++L+MA+SE +P SVIFVVHGMGTGAVKQRALEILGKHP V  
Sbjct: 797 TSKNTVDLRGMRVEEAVLHLNMAISEREPHSVIFVVHGMGTGAVKQRALEILGKHPRVTN 856

Query: 447 YEAEGPTNFGCTVAYI 462
           YEAE P NFGCTVAYI
Sbjct: 857 YEAESPMNFGCTVAYI 872