Jatropha Genome Database

JcCA0289411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289411.10 - phase: 0 
         (547 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002387 conserved hypothetical protein                          974   0.0  

>29851.m002387 conserved hypothetical protein
          Length = 1255

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/544 (87%), Positives = 491/544 (90%), Gaps = 1/544 (0%)

Query: 4    SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL 63
            SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL
Sbjct: 713  SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL 772

Query: 64   SSIDPEAMAVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRX 123
            S IDPEAMAVEP+LVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR 
Sbjct: 773  SGIDPEAMAVEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRS 832

Query: 124  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVQGAIAKISSTSDGVSNSTPNPISGP 183
                                            AWVQGAIAKISST+DGVSN+TPNPISGP
Sbjct: 833  MVTSPTQSAASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGP 892

Query: 184  SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRTQQLPRFIGGAQRNPDS 243
            SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFC+FFRRTQ LPRFIG AQR+ D+
Sbjct: 893  SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQ-LPRFIGVAQRSTDT 951

Query: 244  NMQKPQPGAPGKVEEGNSVSSKLAPTMVRSDEGQAARGAQLVPGVKGAEDGPAGRSRLGS 303
            NMQKPQ GAPGKVEE NSVSSK A  MVRSDE Q ARG QLVPG KG E+GPAGRSRLG 
Sbjct: 952  NMQKPQSGAPGKVEEANSVSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGY 1011

Query: 304  GNAGQGYTFEEVRVLFLILMDLCRRTSALAHPLPVSQVGSGNIQVRLHYIDGNYTVLPEV 363
            GNAGQGYTFEEV+VLFLILMDLCRRT+ALAHPLPVSQVGS NIQVRLHYI+GNYTVLPEV
Sbjct: 1012 GNAGQGYTFEEVKVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEV 1071

Query: 364  VEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDLEDTSSADDTP 423
            VEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSD ED +SADDTP
Sbjct: 1072 VEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDITSADDTP 1131

Query: 424  RQSSYTDSLDFSSLENCDVYCGVNGLWPKKRRMSERDAAFGLNTSVGLGAYLGIMGSRRD 483
            R SSYTDSLDFSSLENCDVY GVNGLWP+KRRMSERDAAFGLNTSVGLGAYLGIMGSRRD
Sbjct: 1132 RMSSYTDSLDFSSLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRD 1191

Query: 484  VVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATSPPNQNEREAWWISRWAYGCPMCGGTW 543
            VVTAVWKTGLEGVWYKCIRCLRQTSAFASPGAT+PPNQN+REAWWISRWAYGCPMCGGTW
Sbjct: 1192 VVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATNPPNQNDREAWWISRWAYGCPMCGGTW 1251

Query: 544  VRVV 547
            VRVV
Sbjct: 1252 VRVV 1255