Jatropha Genome Database

JcCA0288061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.20 + phase: 0 
         (209 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29772.m000311 conserved hypothetical protein                          295   8e-81

>29772.m000311 conserved hypothetical protein
          Length = 236

 Score =  295 bits (756), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 168/204 (82%), Gaps = 5/204 (2%)

Query: 1   MFGMSYGEIFLLLGATAALIGPKDLPVIARTAGRLAGRAIGYVQLARGQFESVMQQSQAR 60
           MFG+SYGE+FLLLGATAALIG KDLP+I+RTAGRLAGRAIGYVQLARGQ E+VMQQSQAR
Sbjct: 1   MFGISYGELFLLLGATAALIGSKDLPIISRTAGRLAGRAIGYVQLARGQLENVMQQSQAR 60

Query: 61  QVHKELQDTMAQLEAIRHEIRSISILSPGPLTRRLVDNVDNTSGSNANGICENQDVENTL 120
           QVHKELQDTMAQLEAIRHEIRS+SIL+PGPLTRRLVDN+D+TS SN N +  +QD EN  
Sbjct: 61  QVHKELQDTMAQLEAIRHEIRSVSILNPGPLTRRLVDNIDHTSNSNDNIVPNSQDAENKP 120

Query: 121 KVTISQPSSEQRIGGSIATSAFSKASDSCSMHSQATVYARLAEAAAQKTSLLDSGADAEK 180
           K TIS+  +E   GGSI T   SK SD C MHSQAT +ARLAE++A KT     G DA +
Sbjct: 121 KATISKHCTEPTNGGSIPTPKNSKTSDLCIMHSQATAHARLAESSALKT-----GTDAGE 175

Query: 181 LIDDAGLPNVLPVSAESAGMLPKR 204
           LIDDA L NVLP+SAES GMLP R
Sbjct: 176 LIDDASLLNVLPLSAESTGMLPNR 199