Jatropha Genome Database

JcCA0288061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0288061.10 - phase: 0 
         (221 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001987 trytophan synthase alpha subunit, putative              344   2e-95

>29883.m001987 trytophan synthase alpha subunit, putative
          Length = 313

 Score =  344 bits (882), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/198 (83%), Positives = 177/198 (89%)

Query: 1   MAIAVKPTASFLHLRKPETHLFIRFPPYKSAVVSTRRIAEMAALTVTPSLGLAETFSNLK 60
           MA+A+K T SFLH RKPETHL IR P YK  V+STRR A MA LT   +L L+ETFSNLK
Sbjct: 1   MAVALKSTTSFLHDRKPETHLLIRSPSYKPTVISTRRFAPMATLTAAKNLSLSETFSNLK 60

Query: 61  KEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 120
           K GKVAFIPYITAGDPDLSTTAEALK+LDSCGSDIIELGVPYSDPLADGPVIQAAATRSL
Sbjct: 61  KRGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSL 120

Query: 121 AKGTNFDAVISMLKEVIPQLSSPVALFTYYNPILKRGIEKFMSTVKDVGVHGLVVPDVPL 180
           A+GTNFDA+ SMLKEV+PQLS P+ALFTYYNPILKRGIEKFMSTVKD+GVHGLVVPDVPL
Sbjct: 121 ARGTNFDAITSMLKEVVPQLSCPIALFTYYNPILKRGIEKFMSTVKDIGVHGLVVPDVPL 180

Query: 181 EETELLRKEAVKNNIELV 198
           EETELLR EA K NIELV
Sbjct: 181 EETELLRNEAAKKNIELV 198