Jatropha Genome Database

JcCA0287971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287971.10 + phase: 0 
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005421 Charged multivesicular body protein 4b, putative        211   2e-55
30065.m001146 Charged multivesicular body protein, putative            47   5e-06

>29912.m005421 Charged multivesicular body protein 4b, putative
          Length = 218

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 128/203 (63%)

Query: 1   MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
           MFNRLFGKPKQETNALTTLD                             FTR +NKRAAI
Sbjct: 1   MFNRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLSKKAIAEVERAKEFTRTKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALATPIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DVDKTMDEINEQTENMKQIQEAL+TPIG                                
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180

Query: 181 XXXXXXXXXXGRQPARPVPQKRT 203
                     GRQP RP  QK+T
Sbjct: 181 APAAPVQVPAGRQPNRPAAQKQT 203


>30065.m001146 Charged multivesicular body protein, putative
          Length = 237

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%)

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATN 118
           A++ LK+KR+YE Q + L N    +       EG K   +T+ AL++    +K M K   
Sbjct: 65  AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMSALKSANKELKGMMKTVK 124

Query: 119 IDDVDKTMDEINEQTENMKQIQEALA 144
           I D+D   DE+ +  +   +IQE L 
Sbjct: 125 IQDIDNLQDEMMDLMDVSNEIQETLG 150