Jatropha Genome Database

JcCA0287661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287661.10 - phase: 0 /pseudo
         (74 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001829 ubiquitin-protein ligase, putative                       59   4e-10
29843.m000289 conserved hypothetical protein                           48   9e-07
29907.m000633 hypothetical protein                                     45   8e-06

>29751.m001829 ubiquitin-protein ligase, putative
          Length = 358

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 1  MANLHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN*KIH 50
          M++L  D+I ++LL LPVK L   RC+SK +C LID+P+F KAHL+  I 
Sbjct: 1  MSSLFPDIIFDVLLRLPVKTLLRFRCISKSYCTLIDNPDFIKAHLDTSIQ 50


>29843.m000289 conserved hypothetical protein
          Length = 393

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 29/40 (72%)

Query: 5  HSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAH 44
          + DLIT+ILL LPVKPL   + VSKQ+ +LI +P+F   H
Sbjct: 13 NEDLITQILLRLPVKPLLRFKSVSKQWLSLISTPHFSSLH 52


>29907.m000633 hypothetical protein
          Length = 147

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 1  MANLHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          M ++  D+  +ILL LPVKPL   +CVSK + +LI  P F K+HL 
Sbjct: 1  MTHVPEDIAIDILLRLPVKPLLRFKCVSKTWYSLISDPCFIKSHLQ 46