Jatropha Genome Database

JcCA0286981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286981.10 + phase: 0 /partial
         (176 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006240 conserved hypothetical protein                          313   4e-86
30142.m000632 Rho GTPase activator, putative                          215   9e-57

>29908.m006240 conserved hypothetical protein
          Length = 980

 Score =  313 bits (801), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/180 (84%), Positives = 160/180 (88%), Gaps = 4/180 (2%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVNLTLGGIDLNNS 60
           +FKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPS  PQKG EVNLTLGGIDLNNS
Sbjct: 48  VFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSAVPQKGSEVNLTLGGIDLNNS 107

Query: 61  GSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTALENALAQAPSACLAMGQNG 120
           GSVVVK+DKKLLTVLFPDGRDGR FTLKAET EDLY+WKTALENALAQAPSA L MGQNG
Sbjct: 108 GSVVVKSDKKLLTVLFPDGRDGRAFTLKAETMEDLYDWKTALENALAQAPSAALVMGQNG 167

Query: 121 IFKNDQLEGANDSPEQS----KDKVPLQALVIGRPVLLALEDVDGSPSFLEKALRYIEEH 176
           IFKND  +    S +Q     KDKVP +A+VIGRPVLLALEDVDG+PSFLEKALRYIEEH
Sbjct: 168 IFKNDPTDCVEGSFDQCVLPVKDKVPGKAMVIGRPVLLALEDVDGTPSFLEKALRYIEEH 227


>30142.m000632 Rho GTPase activator, putative
          Length = 821

 Score =  215 bits (547), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 119/136 (87%), Gaps = 1/136 (0%)

Query: 39  STAPQKGGEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEW 98
           S  PQ+GGEVNLTLGGIDLNNSGSVVV+ DKKLLTVLFPDGRDGR FTLKAETSEDLYEW
Sbjct: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62

Query: 99  KTALENALAQAPSACLAMGQNGIFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALED 158
           KTALE+ALAQAPSA L MG NGIF++D  E A  S  Q +DK P+++LV+GRP+LLALED
Sbjct: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNE-AEGSFHQWRDKRPVKSLVVGRPILLALED 121

Query: 159 VDGSPSFLEKALRYIE 174
           +DG PSFLEKALR++E
Sbjct: 122 IDGGPSFLEKALRFLE 137