Jatropha Genome Database

JcCA0286251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286251.20 - phase: 0 
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005468 conserved hypothetical protein                          261   9e-71
30120.m000375 hypothetical protein                                     74   3e-14
30138.m003967 RNA binding protein, putative                            73   6e-14
29905.m000430 hypothetical protein                                     67   3e-12
30174.m009098 RNA binding protein, putative                            66   5e-12

>29912.m005468 conserved hypothetical protein
          Length = 509

 Score =  261 bits (667), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 135/164 (82%), Gaps = 4/164 (2%)

Query: 1   MQVIPRSASEATLYDGRVLERVKGEGKQHITEEGSSSQTEEDVKGSSMTLRAKD----ST 56
           MQVI R++SEATLYD R +ERVK +GKQHI EEGSSS TE+D K S M LR+KD    S 
Sbjct: 346 MQVISRNSSEATLYDRRTIERVKSDGKQHIAEEGSSSHTEDDAKRSGMNLRSKDASGPSA 405

Query: 57  AEGFSFDFSAIKPGIASDLKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIV 116
           AE  SFDFSAIKPGIASD+KFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIV
Sbjct: 406 AEDSSFDFSAIKPGIASDVKFGGCGSYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIV 465

Query: 117 CACHGSHMSPEEFVRHXXXXXXXXXXGSGLASFPSTNPAASAQS 160
           CACHGSHMSPEEFVRH          GS LASFPS NPAASAQS
Sbjct: 466 CACHGSHMSPEEFVRHANEENVNSENGSNLASFPSNNPAASAQS 509


>30120.m000375 hypothetical protein
          Length = 639

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 82  SYPNLPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFVRH 132
           S P +P VSTTG+GPNG+TI+G  YRY+  ++ I+C CHGS  SP EFV+H
Sbjct: 569 SLPYMPCVSTTGNGPNGKTINGFLYRYTKTEVSIICVCHGSSFSPAEFVQH 619


>30138.m003967 RNA binding protein, putative
          Length = 155

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 37/47 (78%)

Query: 86  LPWVSTTGSGPNGRTISGVTYRYSANQIRIVCACHGSHMSPEEFVRH 132
           +P V+TTG+GP GR I G+ Y+YS +Q+ IVC CHGS +SP EFVRH
Sbjct: 88  MPSVTTTGNGPYGRKIEGILYKYSKSQVTIVCVCHGSFLSPAEFVRH 134


>29905.m000430 hypothetical protein
          Length = 133

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 85  NLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
           ++P VST G GPNG+ I G  YRY    ++RIVC CHGS +SP EFV+H
Sbjct: 64  DMPCVSTKGDGPNGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKH 112


>30174.m009098 RNA binding protein, putative
          Length = 355

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 79  GCGSYPNLPWVSTTGSGPNGRTISGVTYRY-SANQIRIVCACHGSHMSPEEFVRH 132
           G     ++P V T G GPNGR + G+ Y+Y    ++RI+C CHGS +SP EFV+H
Sbjct: 279 GMNPMEDMPCVFTIGDGPNGRKVEGILYKYGKGEEVRIMCVCHGSFLSPAEFVKH 333