Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008758 protein binding protein, putative                        87   2e-18

>30128.m008758 protein binding protein, putative
          Length = 276

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 42/52 (80%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           GFNIEAYD+VY QQLGWN P  TGE+AD EPS   P +PYLY FDDDSDET+
Sbjct: 225 GFNIEAYDEVYMQQLGWNAPTVTGEAADAEPSEQRPVIPYLYIFDDDSDETE 276