Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (221 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001418 Anaphase-promoting complex subunit, putative            343   3e-95

>29933.m001418 Anaphase-promoting complex subunit, putative
          Length = 763

 Score =  343 bits (881), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 163/201 (81%), Positives = 175/201 (87%)

Query: 1   METDEEQPVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISP 60
           METD+EQ VLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK+LLHRFNWQRLWTISP
Sbjct: 1   METDDEQRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60

Query: 61  GKCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQLKRI 120
           G CITSLCW PDGKAIAVGLEDGTISLHDVENGKLLRSL+SHTVAVVCLNWEEDG + + 
Sbjct: 61  GGCITSLCWHPDGKAIAVGLEDGTISLHDVENGKLLRSLRSHTVAVVCLNWEEDGLVNKD 120

Query: 121 DCCNFSTYEDXXXXXXXXXXXXXXXXGVVSGDAGFMDDNEDSYQELSNSSYQQFNILCSA 180
           D CN+ TYED                GVVSGD GFMD +EDSYQELS+SSYQ+FNILCSA
Sbjct: 121 DLCNYLTYEDRTSRFFPPAPKPPRMPGVVSGDTGFMDGSEDSYQELSSSSYQRFNILCSA 180

Query: 181 DRDGSICFSIFGIFPIGKIVS 201
           D+DGSICFSIFGIFPIG+IV+
Sbjct: 181 DKDGSICFSIFGIFPIGQIVA 201