Jatropha Genome Database

JcCA0285281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285281.10 + phase: 0 /partial
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29585.m000583 amino acid binding protein, putative                    223   2e-59
30078.m002281 amino acid binding protein, putative                    139   4e-34
28462.m000129 amino acid binding protein, putative                    120   2e-28

>29585.m000583 amino acid binding protein, putative
          Length = 420

 Score =  223 bits (567), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/127 (84%), Positives = 116/127 (91%), Gaps = 2/127 (1%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MG+P+SDDVVLI+ AK S DP+VVTVNCPD+AGLGCDLCRIILEFGLSI+RADFSTDGRW
Sbjct: 1   MGMPSSDDVVLIEPAKNSGDPTVVTVNCPDQAGLGCDLCRIILEFGLSISRADFSTDGRW 60

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFV 120
           CYIVFWVVP ST  SHK++WDSLKNRLS ASPPCL PFYFDQKSN  S+P LYLLKFCFV
Sbjct: 61  CYIVFWVVPHST--SHKVNWDSLKNRLSCASPPCLGPFYFDQKSNVTSVPSLYLLKFCFV 118

Query: 121 DRKGLLH 127
           DRKGLLH
Sbjct: 119 DRKGLLH 125


>30078.m002281 amino acid binding protein, putative
          Length = 409

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 88/131 (67%), Gaps = 10/131 (7%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI   DDVV+I+ ++  +D SV+TVNCPDK GLGCDLCRIIL FGLSI R DFSTDG+W
Sbjct: 1   MGI-LYDDVVIIRQSEKESDLSVITVNCPDKTGLGCDLCRIILFFGLSIVRGDFSTDGKW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCL----IPFYFDQKSNGPSLPPLYLLK 116
           CYIVFWV  +S++      W  LK RL    P C     IP+Y D+    P  P ++LLK
Sbjct: 60  CYIVFWVAGNSSTR-----WGLLKKRLLGVCPSCSSASGIPYYRDELLQPPRPPDVFLLK 114

Query: 117 FCFVDRKGLLH 127
            C  DR+GLLH
Sbjct: 115 LCCHDRRGLLH 125


>28462.m000129 amino acid binding protein, putative
          Length = 413

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 77/125 (61%), Gaps = 9/125 (7%)

Query: 7   DDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRWCYIVFW 66
           +DVV+I  A+   D +V+TVNCPDK GLGCDLCRIIL FGLSI+R D  TDG+WCYIV W
Sbjct: 6   EDVVVISQAEKPGDSTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLQTDGKWCYIVLW 65

Query: 67  VVPDSTSSSHKLDWDSLKNRLSFASPPCLIP---FYFDQKSNGPSLPPLYLLKF-CFVDR 122
           VV   ++      W  LK RL    P         Y+  K   P  P ++LLKF C  DR
Sbjct: 66  VVGKPSTR-----WSLLKMRLLEVCPSYFSTSEISYYRPKDQQPKKPDVFLLKFWCSYDR 120

Query: 123 KGLLH 127
           +GLLH
Sbjct: 121 EGLLH 125