Jatropha Genome Database

JcCA0285211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285211.10 + phase: 0 
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28166.m001095 conserved hypothetical protein                          174   1e-44

>28166.m001095 conserved hypothetical protein
          Length = 523

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 97/117 (82%), Gaps = 1/117 (0%)

Query: 1   MADRDRG-DWEFYLRTLSSSARDSNLASDPASDPSLLQSIKRLYELCKQENSEDLVARVY 59
           M+DR RG DW+F+LRTLS SARDS LA DPASDPSLLQS+++L+ELCK+ENSEDL+ARVY
Sbjct: 1   MSDRQRGGDWDFHLRTLSISARDSTLAGDPASDPSLLQSVRKLHELCKKENSEDLIARVY 60

Query: 60  PQINRLFQRSVNSLAQSKSSYGXXXXXXXXXXXXXGEVVLHDADPSLKTFFRSCLSR 116
           PQINRLFQRSV SL+QS S+YG             GEVVLHDADPSLKTFFRSCLSR
Sbjct: 61  PQINRLFQRSVASLSQSTSAYGLLLLAILQFFLDFGEVVLHDADPSLKTFFRSCLSR 117