Jatropha Genome Database

JcCA0283321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283321.10 - phase: 0 /partial
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29989.m000426 solanesyl diphosphate synthase, putative                159   3e-40

>29989.m000426 solanesyl diphosphate synthase, putative
          Length = 420

 Score =  159 bits (402), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 90/117 (76%), Gaps = 5/117 (4%)

Query: 1   MMSMTCRSIDFGRTLLDLAACGCSSNASIDRYSVRNYAK--FASXXXXXXXXXX---XXX 55
           MMSMTC+S+DFGRT+LDLAACGCSSNASIDRYSVRNYAK  F S                
Sbjct: 1   MMSMTCQSLDFGRTVLDLAACGCSSNASIDRYSVRNYAKPVFRSCNRDYAARRLLCCRRD 60

Query: 56  XXXXXVSSTKTPETLPNGVAQGPVTLLDLKESKGPISLKNLFEVVADDLQTLNHNLR 112
                VSSTKTPET+ NGVA+GP TLLDLKESKGPIS+KNLFEVVADDLQTLN NLR
Sbjct: 61  SARCRVSSTKTPETVLNGVAKGPATLLDLKESKGPISVKNLFEVVADDLQTLNQNLR 117