Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          328   1e-90

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  328 bits (842), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 189/237 (79%), Gaps = 2/237 (0%)

Query: 10  VAIPENRDVNNFDDCVAAFLLQRAFNMYEFEDVRKLAAELCGRIHPQVLFPIVSSLLEDA 69
           V   E  DVN  DDC+AAFLLQRAFN YEFEDVRKLAAELCGR+HPQVLFP+V ++LE+A
Sbjct: 713 VITQECGDVNIADDCIAAFLLQRAFNKYEFEDVRKLAAELCGRLHPQVLFPVVLTILENA 772

Query: 70  AKCEDVLIIKACLFAICTSLVVRGRESVSHPIIIQIRKTIETVLLWPSLDGDEVSKAQHG 129
           A   D+L IKACLFAICTSLVV+G++SV HP+I QIRKTIE VLLWPSLDGDEVSKAQHG
Sbjct: 773 ANFHDILKIKACLFAICTSLVVKGKDSVYHPVIFQIRKTIEAVLLWPSLDGDEVSKAQHG 832

Query: 130 CIDCLALMICAELPNLESFKNSE-KFSLLGKTSYAGWYLIPRNSILAYVIHQLTSDKNEV 188
           CIDCLALMICAEL   ES K+S  KF + GK   +G      NS LAYVIHQL +DKNEV
Sbjct: 833 CIDCLALMICAELQATESLKDSSNKFRIAGKIIDSG-KSTAGNSALAYVIHQLANDKNEV 891

Query: 189 PVCTLTSENCEHDAPVLCSFRLCMANVLLSACQKLSDSGKKLFARETLPRLISSVEV 245
            V +L  ENCE +A + CS RLCMAN L+SACQK+SDSGKK FAR +LP LI SVE+
Sbjct: 892 SVSSLNIENCEFEATIPCSLRLCMANALISACQKISDSGKKSFARRSLPNLIHSVEM 948