Jatropha Genome Database

JcCA0282791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282791.10 - phase: 0 /partial
         (58 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002361 Alpha-expansin 8 precursor, putative                     51   1e-07

>29729.m002361 Alpha-expansin 8 precursor, putative
          Length = 252

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 37/58 (63%)

Query: 1  MAIPTFSAATLLLFVLNLCFRGTYGDYGGWQSGHATFYXXXXXXXXXXXXXXYGNLYS 58
          MA  TF A +LL F+LNLC RGTYGDYGGWQS HATFY              YGNLYS
Sbjct: 1  MAAATFPAISLLFFLLNLCLRGTYGDYGGWQSAHATFYGGGDASGTMGGACGYGNLYS 58