Jatropha Genome Database

JcCA0282311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282311.10 + phase: 0 /pseudo
         (72 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m001985 (S)-2-hydroxy-acid oxidase, putative                    101   9e-23
29727.m000487 (S)-2-hydroxy-acid oxidase, putative                     65   8e-12
29727.m000486 (S)-2-hydroxy-acid oxidase, putative                     59   5e-10
29727.m000481 (S)-2-hydroxy-acid oxidase, putative                     57   3e-09

>29693.m001985 (S)-2-hydroxy-acid oxidase, putative
          Length = 369

 Score =  101 bits (251), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/46 (97%), Positives = 46/46 (100%)

Query: 1  MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
          MEITNVMEYEEIARQKLPKMV+DYYASGAEDQWTLKENRNAFSRIL
Sbjct: 1  MEITNVMEYEEIARQKLPKMVYDYYASGAEDQWTLKENRNAFSRIL 46


>29727.m000487 (S)-2-hydroxy-acid oxidase, putative
          Length = 364

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 34/44 (77%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRI 45
          E  NV E++E+A+Q LPKM +DYYA GAEDQ TLKEN  AF RI
Sbjct: 4  EPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFHRI 47


>29727.m000486 (S)-2-hydroxy-acid oxidase, putative
          Length = 364

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 31/44 (70%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRI 45
          E  NV E + +A+Q LPKM +DYY  GAEDQ TLKEN  AF RI
Sbjct: 4  EPVNVNELQILAKQVLPKMYYDYYTGGAEDQHTLKENEEAFKRI 47


>29727.m000481 (S)-2-hydroxy-acid oxidase, putative
          Length = 364

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRI 45
          E  NV E++ +A+Q LPKM +D+Y+ GAEDQ TLKEN  AF +I
Sbjct: 4  EPVNVNEFQILAKQVLPKMHYDFYSGGAEDQHTLKENVQAFKKI 47