Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281241.10 - phase: 0 /partial
         (108 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29601.m000441 aprataxin, putative                                     188   5e-49

>29601.m000441 aprataxin, putative
          Length = 749

 Score =  188 bits (478), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 95/104 (91%)

Query: 2   PSMRQLHLHVISQDFNSDNLKNKKHWNSFTTAFFRDSVDVIEEIRNHGKATLKDDDSYLS 61
           PSMRQLHLHVISQDFNS++LKNKKHWN+F TAFFRDSVDVIEE++NHGKA +KDD+SYLS
Sbjct: 641 PSMRQLHLHVISQDFNSNHLKNKKHWNTFNTAFFRDSVDVIEEVQNHGKANIKDDNSYLS 700

Query: 62  TELRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRLVLNQD 105
            ELRCHRCRSAHPNIPRL+SHI NCRAPFP  LLE  RL+L QD
Sbjct: 701 MELRCHRCRSAHPNIPRLRSHISNCRAPFPTFLLEKDRLLLPQD 744